JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PCYOX1_chr2_70253137_70286185	0/0	c0012	1518	1	0	1	0	0	0	copy fasta	PCYOX1	chr2	70253137	70286185
PCYOX1_chr2_70253137_70286185	0/0	c0013	1518	1	0	0	0	0	1	copy fasta	PCYOX1	chr2	70253137	70286185
PCYOX1_chr2_70253137_70286185	0/0	c0014	1518	1	0	0	1	0	0	copy fasta	PCYOX1	chr2	70253137	70286185
PCYOX1_chr2_70253137_70286185	0/0	c0015	1518	1	0	0	1	0	0	copy fasta	PCYOX1	chr2	70253137	70286185
PCYOX1_chr2_70253137_70286185	0/0	c0016	1518	1	0	0	0	0	1	copy fasta	PCYOX1	chr2	70253137	70286185
PCYOX1_chr2_70253137_70286185	0/0	c0017	1518	1	0	0	0	0	1	copy fasta	PCYOX1	chr2	70253137	70286185
PCYOX1_chr2_70253137_70286185	0/0	c0018	1518	1	1	0	0	0	0	copy fasta	PCYOX1	chr2	70253137	70286185
PCYOX1_chr2_70253137_70286185	0/0	c0019	1518	1	0	0	1	0	0	copy fasta	PCYOX1	chr2	70253137	70286185
PCYT1A_chr3_196229368_196292726	1/1	c0001	1104	295	95	57	88	16	37	copy fasta	PCYT1A	chr3	196229368	196292726
PCYT1A_chr3_196229368_196292726	0/0	c0002	1104	5	0	0	5	0	0	copy fasta	PCYT1A	chr3	196229368	196292726
PCYT1A_chr3_196229368_196292726	0/0	c0003	1104	3	0	3	0	0	0	copy fasta	PCYT1A	chr3	196229368	196292726
PCYT1A_chr3_196229368_196292726	0/0	c0004	1104	2	0	0	0	0	2	copy fasta	PCYT1A	chr3	196229368	196292726
PCYT1A_chr3_196229368_196292726	0/0	c0005	1104	1	0	0	1	0	0	copy fasta	PCYT1A	chr3	196229368	196292726
PCYT1A_chr3_196229368_196292726	0/0	c0006	1104	1	1	0	0	0	0	copy fasta	PCYT1A	chr3	196229368	196292726
PCYT1A_chr3_196229368_196292726	0/0	c0007	1104	1	0	0	0	0	1	copy fasta	PCYT1A	chr3	196229368	196292726
PCYT1A_chr3_196229368_196292726	0/0	c0008	1104	1	0	0	1	0	0	copy fasta	PCYT1A	chr3	196229368	196292726
PCYT1A_chr3_196229368_196292726	0/0	c0009	1104	1	0	0	1	0	0	copy fasta	PCYT1A	chr3	196229368	196292726
PCYT1B_chrX_24553087_24652347	1/1	c0001	1110	230	42	41	107	12	26	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	c0002	1110	27	24	3	0	0	0	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	c0003	1111	1	0	0	1	0	0	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	c0004	1111	1	0	0	1	0	0	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	c0005	1110	1	0	0	0	1	0	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT2_chr17_81895958_81916399	1/1	c0001	1170	290	80	58	102	8	40	copy fasta	PCYT2	chr17	81895958	81916399
PCYT2_chr17_81895958_81916399	0/0	c0002	1170	6	6	0	0	0	0	copy fasta	PCYT2	chr17	81895958	81916399
PCYT2_chr17_81895958_81916399	0/0	c0003	1170	1	0	0	1	0	0	copy fasta	PCYT2	chr17	81895958	81916399
PCYT2_chr17_81895958_81916399	0/0	c0004	1170	1	1	0	0	0	0	copy fasta	PCYT2	chr17	81895958	81916399
PCYT2_chr17_81895958_81916399	0/0	c0005	1170	1	1	0	0	0	0	copy fasta	PCYT2	chr17	81895958	81916399
PCYT2_chr17_81895958_81916399	0/0	c0006	1170	1	0	0	1	0	0	copy fasta	PCYT2	chr17	81895958	81916399
PC_chr11_66843420_66963383	1/1	c0001	3537	257	67	41	124	7	16	copy fasta	PC	chr11	66843420	66963383
PC_chr11_66843420_66963383	0/0	c0002	3537	2	0	0	2	0	0	copy fasta	PC	chr11	66843420	66963383
PC_chr11_66843420_66963383	0/0	c0003	3537	2	0	0	2	0	0	copy fasta	PC	chr11	66843420	66963383
PC_chr11_66843420_66963383	0/0	c0004	3537	2	2	0	0	0	0	copy fasta	PC	chr11	66843420	66963383
PC_chr11_66843420_66963383	0/0	c0005	3537	1	0	0	0	0	1	copy fasta	PC	chr11	66843420	66963383
PC_chr11_66843420_66963383	0/0	c0006	3537	1	0	0	1	0	0	copy fasta	PC	chr11	66843420	66963383
PC_chr11_66843420_66963383	0/0	c0007	3537	1	1	0	0	0	0	copy fasta	PC	chr11	66843420	66963383
PC_chr11_66843420_66963383	0/0	c0008	3537	1	0	0	0	0	1	copy fasta	PC	chr11	66843420	66963383
PC_chr11_66843420_66963383	0/0	c0009	3537	1	1	0	0	0	0	copy fasta	PC	chr11	66843420	66963383
PC_chr11_66843420_66963383	0/0	c0010	3537	1	1	0	0	0	0	copy fasta	PC	chr11	66843420	66963383
PC_chr11_66843420_66963383	0/0	c0011	3537	1	0	0	0	1	0	copy fasta	PC	chr11	66843420	66963383
PC_chr11_66843420_66963383	0/0	c0012	3537	1	0	1	0	0	0	copy fasta	PC	chr11	66843420	66963383
PC_chr11_66843420_66963383	0/0	c0013	3537	1	1	0	0	0	0	copy fasta	PC	chr11	66843420	66963383
PC_chr11_66843420_66963383	0/0	c0014	3537	1	0	0	1	0	0	copy fasta	PC	chr11	66843420	66963383
PC_chr11_66843420_66963383	0/0	c0015	3537	1	1	0	0	0	0	copy fasta	PC	chr11	66843420	66963383
PDAP1_chr7_99389673_99413597	1/1	c0001	546	332	85	38	151	14	42	copy fasta	PDAP1	chr7	99389673	99413597
PDAP1_chr7_99389673_99413597	0/0	c0002	546	1	1	0	0	0	0	copy fasta	PDAP1	chr7	99389673	99413597
PDAP1_chr7_99389673_99413597	0/0	c0003	546	1	0	0	1	0	0	copy fasta	PDAP1	chr7	99389673	99413597
PDCD10_chr3_167678298_167739892	1/1	c0001	639	284	80	34	140	8	20	copy fasta	PDCD10	chr3	167678298	167739892
PDCD11_chr10_103391626_103451294	1/0	c0001	5616	129	22	21	75	3	7	copy fasta	PDCD11	chr10	103391626	103451294
PDCD11_chr10_103391626_103451294	0/1	c0002	5616	96	7	21	46	5	16	copy fasta	PDCD11	chr10	103391626	103451294
PDCD11_chr10_103391626_103451294	0/0	c0003	5616	24	4	0	20	0	0	copy fasta	PDCD11	chr10	103391626	103451294