JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PDCD11_chr10_103391626_103451294	0/0	c0004	5616	22	19	1	1	0	1	copy fasta	PDCD11	chr10	103391626	103451294
PDCD11_chr10_103391626_103451294	0/0	c0005	5616	19	16	3	0	0	0	copy fasta	PDCD11	chr10	103391626	103451294
PDCD11_chr10_103391626_103451294	0/0	c0006	5616	9	1	3	1	3	1	copy fasta	PDCD11	chr10	103391626	103451294
PDCD11_chr10_103391626_103451294	0/0	c0007	5616	8	5	1	0	2	0	copy fasta	PDCD11	chr10	103391626	103451294
PDCD11_chr10_103391626_103451294	0/0	c0008	5616	8	2	4	0	1	1	copy fasta	PDCD11	chr10	103391626	103451294
PDCD11_chr10_103391626_103451294	0/0	c0009	5616	8	0	2	0	0	6	copy fasta	PDCD11	chr10	103391626	103451294
PDCD11_chr10_103391626_103451294	0/0	c0010	5616	4	4	0	0	0	0	copy fasta	PDCD11	chr10	103391626	103451294
PDCD11_chr10_103391626_103451294	0/0	c0011	5616	3	0	0	3	0	0	copy fasta	PDCD11	chr10	103391626	103451294
PDCD11_chr10_103391626_103451294	0/0	c0012	5616	3	0	0	3	0	0	copy fasta	PDCD11	chr10	103391626	103451294
PDCD11_chr10_103391626_103451294	0/0	c0013	5616	2	2	0	0	0	0	copy fasta	PDCD11	chr10	103391626	103451294
PDCD11_chr10_103391626_103451294	0/0	c0014	5616	2	0	0	0	0	2	copy fasta	PDCD11	chr10	103391626	103451294
PDCD11_chr10_103391626_103451294	0/0	c0015	5616	2	1	0	1	0	0	copy fasta	PDCD11	chr10	103391626	103451294
PDCD11_chr10_103391626_103451294	0/0	c0016	5616	2	0	0	2	0	0	copy fasta	PDCD11	chr10	103391626	103451294
PDCD11_chr10_103391626_103451294	0/0	c0017	5616	2	1	1	0	0	0	copy fasta	PDCD11	chr10	103391626	103451294
PDCD11_chr10_103391626_103451294	0/0	c0018	5616	2	0	2	0	0	0	copy fasta	PDCD11	chr10	103391626	103451294
PDCD11_chr10_103391626_103451294	0/0	c0019	5616	2	0	2	0	0	0	copy fasta	PDCD11	chr10	103391626	103451294
PDCD11_chr10_103391626_103451294	0/0	c0020	5616	1	0	0	1	0	0	copy fasta	PDCD11	chr10	103391626	103451294
PDCD11_chr10_103391626_103451294	0/0	c0021	5616	1	1	0	0	0	0	copy fasta	PDCD11	chr10	103391626	103451294
PDCD11_chr10_103391626_103451294	0/0	c0022	5616	1	1	0	0	0	0	copy fasta	PDCD11	chr10	103391626	103451294
PDCD11_chr10_103391626_103451294	0/0	c0023	5616	1	0	1	0	0	0	copy fasta	PDCD11	chr10	103391626	103451294
PDCD11_chr10_103391626_103451294	0/0	c0024	5616	1	1	0	0	0	0	copy fasta	PDCD11	chr10	103391626	103451294
PDCD11_chr10_103391626_103451294	0/0	c0025	5616	1	0	0	0	0	1	copy fasta	PDCD11	chr10	103391626	103451294
PDCD11_chr10_103391626_103451294	0/0	c0026	5616	1	0	0	1	0	0	copy fasta	PDCD11	chr10	103391626	103451294
PDCD11_chr10_103391626_103451294	0/0	c0027	5616	1	0	1	0	0	0	copy fasta	PDCD11	chr10	103391626	103451294
PDCD11_chr10_103391626_103451294	0/0	c0028	5616	1	1	0	0	0	0	copy fasta	PDCD11	chr10	103391626	103451294
PDCD11_chr10_103391626_103451294	0/0	c0029	5616	1	0	0	1	0	0	copy fasta	PDCD11	chr10	103391626	103451294
PDCD11_chr10_103391626_103451294	0/0	c0030	5616	1	0	1	0	0	0	copy fasta	PDCD11	chr10	103391626	103451294
PDCD11_chr10_103391626_103451294	0/0	c0031	5616	1	0	0	0	0	1	copy fasta	PDCD11	chr10	103391626	103451294
PDCD11_chr10_103391626_103451294	0/0	c0032	5616	1	0	0	1	0	0	copy fasta	PDCD11	chr10	103391626	103451294
PDCD11_chr10_103391626_103451294	0/0	c0033	5616	1	0	0	1	0	0	copy fasta	PDCD11	chr10	103391626	103451294
PDCD11_chr10_103391626_103451294	0/0	c0034	5616	1	0	0	1	0	0	copy fasta	PDCD11	chr10	103391626	103451294
PDCD1LG2_chr9_5505531_5576282	0/1	c0001	822	286	28	56	160	10	31	copy fasta	PDCD1LG2	chr9	5505531	5576282
PDCD1LG2_chr9_5505531_5576282	0/0	c0002	822	104	53	10	30	0	11	copy fasta	PDCD1LG2	chr9	5505531	5576282
PDCD1LG2_chr9_5505531_5576282	0/0	c0003	822	5	5	0	0	0	0	copy fasta	PDCD1LG2	chr9	5505531	5576282
PDCD1LG2_chr9_5505531_5576282	0/0	c0004	822	4	4	0	0	0	0	copy fasta	PDCD1LG2	chr9	5505531	5576282
PDCD1LG2_chr9_5505531_5576282	0/0	c0005	822	1	1	0	0	0	0	copy fasta	PDCD1LG2	chr9	5505531	5576282
PDCD1LG2_chr9_5505531_5576282	0/0	c0006	822	1	1	0	0	0	0	copy fasta	PDCD1LG2	chr9	5505531	5576282
PDCD1LG2_chr9_5505531_5576282	0/0	c0007	822	1	0	0	1	0	0	copy fasta	PDCD1LG2	chr9	5505531	5576282
PDCD1LG2_chr9_5505531_5576282	0/0	c0008	822	1	0	0	0	0	1	copy fasta	PDCD1LG2	chr9	5505531	5576282
PDCD1LG2_chr9_5505531_5576282	0/0	c0009	822	1	0	0	1	0	0	copy fasta	PDCD1LG2	chr9	5505531	5576282
PDCD1LG2_chr9_5505531_5576282	1/0	c0010	822	1	0	0	0	0	0	copy fasta	PDCD1LG2	chr9	5505531	5576282
PDCD1LG2_chr9_5505531_5576282	0/0	c0011	822	1	0	0	0	0	1	copy fasta	PDCD1LG2	chr9	5505531	5576282
PDCD1_chr2_241844884_241863894	0/1	c0001	867	174	43	32	53	12	33	copy fasta	PDCD1	chr2	241844884	241863894
PDCD1_chr2_241844884_241863894	0/0	c0002	867	123	40	21	50	4	8	copy fasta	PDCD1	chr2	241844884	241863894
PDCD1_chr2_241844884_241863894	0/0	c0003	867	91	0	17	71	0	3	copy fasta	PDCD1	chr2	241844884	241863894
PDCD1_chr2_241844884_241863894	0/0	c0004	867	4	4	0	0	0	0	copy fasta	PDCD1	chr2	241844884	241863894
PDCD1_chr2_241844884_241863894	0/0	c0005	867	4	3	1	0	0	0	copy fasta	PDCD1	chr2	241844884	241863894
PDCD1_chr2_241844884_241863894	0/0	c0006	867	3	1	0	2	0	0	copy fasta	PDCD1	chr2	241844884	241863894
PDCD1_chr2_241844884_241863894	0/0	c0007	867	1	0	0	1	0	0	copy fasta	PDCD1	chr2	241844884	241863894
PDCD1_chr2_241844884_241863894	0/0	c0008	867	1	0	1	0	0	0	copy fasta	PDCD1	chr2	241844884	241863894