JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PDCD1_chr2_241844884_241863894	0/0	c0009	867	1	1	0	0	0	0	copy fasta	PDCD1	chr2	241844884	241863894
PDCD1_chr2_241844884_241863894	0/0	c0010	867	1	0	0	0	0	1	copy fasta	PDCD1	chr2	241844884	241863894
PDCD1_chr2_241844884_241863894	0/0	c0011	867	1	1	0	0	0	0	copy fasta	PDCD1	chr2	241844884	241863894
PDCD1_chr2_241844884_241863894	0/0	c0012	867	1	1	0	0	0	0	copy fasta	PDCD1	chr2	241844884	241863894
PDCD1_chr2_241844884_241863894	0/0	c0013	867	1	0	0	0	0	1	copy fasta	PDCD1	chr2	241844884	241863894
PDCD1_chr2_241844884_241863894	0/0	c0014	926	1	0	0	1	0	0	copy fasta	PDCD1	chr2	241844884	241863894
PDCD2L_chr19_34399399_34431168	1/1	c0001	1077	371	82	72	158	15	42	copy fasta	PDCD2L	chr19	34399399	34431168
PDCD2L_chr19_34399399_34431168	0/0	c0002	1077	5	5	0	0	0	0	copy fasta	PDCD2L	chr19	34399399	34431168
PDCD2L_chr19_34399399_34431168	0/0	c0003	1077	2	0	2	0	0	0	copy fasta	PDCD2L	chr19	34399399	34431168
PDCD2L_chr19_34399399_34431168	0/0	c0004	1077	1	0	0	0	1	0	copy fasta	PDCD2L	chr19	34399399	34431168
PDCD2L_chr19_34399399_34431168	0/0	c0005	1077	1	1	0	0	0	0	copy fasta	PDCD2L	chr19	34399399	34431168
PDCD2L_chr19_34399399_34431168	0/0	c0006	1077	1	1	0	0	0	0	copy fasta	PDCD2L	chr19	34399399	34431168
PDCD2L_chr19_34399399_34431168	0/0	c0007	1077	1	1	0	0	0	0	copy fasta	PDCD2L	chr19	34399399	34431168
PDCD2_chr6_170570295_170589637	1/1	c0001	1035	344	73	68	145	14	42	copy fasta	PDCD2	chr6	170570295	170589637
PDCD2_chr6_170570295_170589637	0/0	c0002	1035	13	13	0	0	0	0	copy fasta	PDCD2	chr6	170570295	170589637
PDCD2_chr6_170570295_170589637	0/0	c0003	1035	3	3	0	0	0	0	copy fasta	PDCD2	chr6	170570295	170589637
PDCD2_chr6_170570295_170589637	0/0	c0004	1035	3	3	0	0	0	0	copy fasta	PDCD2	chr6	170570295	170589637
PDCD2_chr6_170570295_170589637	0/0	c0005	1035	3	0	0	2	0	1	copy fasta	PDCD2	chr6	170570295	170589637
PDCD2_chr6_170570295_170589637	0/0	c0006	1035	1	0	0	1	0	0	copy fasta	PDCD2	chr6	170570295	170589637
PDCD2_chr6_170570295_170589637	0/0	c0007	1035	1	0	0	1	0	0	copy fasta	PDCD2	chr6	170570295	170589637
PDCD2_chr6_170570295_170589637	0/0	c0008	1035	1	0	0	0	0	1	copy fasta	PDCD2	chr6	170570295	170589637
PDCD2_chr6_170570295_170589637	0/0	c0009	1035	1	0	0	0	0	1	copy fasta	PDCD2	chr6	170570295	170589637
PDCD2_chr6_170570295_170589637	0/0	c0010	1035	1	0	0	1	0	0	copy fasta	PDCD2	chr6	170570295	170589637
PDCD2_chr6_170570295_170589637	0/0	c0011	1035	1	0	0	0	0	1	copy fasta	PDCD2	chr6	170570295	170589637
PDCD4_chr10_110866928_110905006	0/0	c0001	1410	396	77	64	204	11	40	copy fasta	PDCD4	chr10	110866928	110905006
PDCD4_chr10_110866928_110905006	0/0	c0002	1410	12	9	2	0	1	0	copy fasta	PDCD4	chr10	110866928	110905006
PDCD4_chr10_110866928_110905006	0/0	c0003	1410	3	1	0	0	0	2	copy fasta	PDCD4	chr10	110866928	110905006
PDCD4_chr10_110866928_110905006	0/0	c0004	1410	1	1	0	0	0	0	copy fasta	PDCD4	chr10	110866928	110905006
PDCD4_chr10_110866928_110905006	0/0	c0005	1410	1	1	0	0	0	0	copy fasta	PDCD4	chr10	110866928	110905006
PDCD4_chr10_110866928_110905006	0/0	c0006	1410	1	0	0	1	0	0	copy fasta	PDCD4	chr10	110866928	110905006
PDCD4_chr10_110866928_110905006	0/0	c0007	1410	1	1	0	0	0	0	copy fasta	PDCD4	chr10	110866928	110905006
PDCD4_chr10_110866928_110905006	0/0	c0008	1410	1	0	0	1	0	0	copy fasta	PDCD4	chr10	110866928	110905006
PDCD4_chr10_110866928_110905006	0/0	c0009	1410	1	0	0	0	0	1	copy fasta	PDCD4	chr10	110866928	110905006
PDCD4_chr10_110866928_110905006	0/0	c0010	1410	1	0	0	0	0	1	copy fasta	PDCD4	chr10	110866928	110905006
PDCD5_chr19_32576190_32592453	1/1	c0001	378	381	71	68	186	15	39	copy fasta	PDCD5	chr19	32576190	32592453
PDCD5_chr19_32576190_32592453	0/0	c0002	378	20	19	0	0	1	0	copy fasta	PDCD5	chr19	32576190	32592453
PDCD5_chr19_32576190_32592453	0/0	c0003	378	17	0	0	16	0	1	copy fasta	PDCD5	chr19	32576190	32592453
PDCD5_chr19_32576190_32592453	0/0	c0004	378	2	2	0	0	0	0	copy fasta	PDCD5	chr19	32576190	32592453
PDCD5_chr19_32576190_32592453	0/0	c0005	378	2	2	0	0	0	0	copy fasta	PDCD5	chr19	32576190	32592453
PDCD6IP_chr3_33793630_33874703	1/1	c0001	2607	90	31	18	33	2	4	copy fasta	PDCD6IP	chr3	33793630	33874703
PDCD6IP_chr3_33793630_33874703	0/0	c0002	2607	86	5	16	57	1	7	copy fasta	PDCD6IP	chr3	33793630	33874703
PDCD6IP_chr3_33793630_33874703	0/0	c0003	2607	76	1	11	45	3	16	copy fasta	PDCD6IP	chr3	33793630	33874703
PDCD6IP_chr3_33793630_33874703	0/0	c0004	2607	21	11	7	0	1	2	copy fasta	PDCD6IP	chr3	33793630	33874703
PDCD6IP_chr3_33793630_33874703	0/0	c0005	2607	12	11	1	0	0	0	copy fasta	PDCD6IP	chr3	33793630	33874703
PDCD6IP_chr3_33793630_33874703	0/0	c0006	2607	9	9	0	0	0	0	copy fasta	PDCD6IP	chr3	33793630	33874703
PDCD6IP_chr3_33793630_33874703	0/0	c0007	2607	7	7	0	0	0	0	copy fasta	PDCD6IP	chr3	33793630	33874703
PDCD6IP_chr3_33793630_33874703	0/0	c0008	2607	6	0	1	0	1	4	copy fasta	PDCD6IP	chr3	33793630	33874703
PDCD6IP_chr3_33793630_33874703	0/0	c0009	2607	3	0	0	2	0	1	copy fasta	PDCD6IP	chr3	33793630	33874703
PDCD6IP_chr3_33793630_33874703	0/0	c0010	2607	2	0	0	2	0	0	copy fasta	PDCD6IP	chr3	33793630	33874703
PDCD6IP_chr3_33793630_33874703	0/0	c0011	2607	1	1	0	0	0	0	copy fasta	PDCD6IP	chr3	33793630	33874703