JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PDCD6IP_chr3_33793630_33874703	0/0	c0012	2607	1	0	0	1	0	0	copy fasta	PDCD6IP	chr3	33793630	33874703
PDCD6IP_chr3_33793630_33874703	0/0	c0013	2607	1	0	1	0	0	0	copy fasta	PDCD6IP	chr3	33793630	33874703
PDCD6IP_chr3_33793630_33874703	0/0	c0014	2607	1	0	0	1	0	0	copy fasta	PDCD6IP	chr3	33793630	33874703
PDCD6IP_chr3_33793630_33874703	0/0	c0015	2607	1	0	1	0	0	0	copy fasta	PDCD6IP	chr3	33793630	33874703
PDCD6IP_chr3_33793630_33874703	0/0	c0016	2607	1	0	0	1	0	0	copy fasta	PDCD6IP	chr3	33793630	33874703
PDCD6_chr5_266646_319974	0/1	c0001	576	158	43	34	50	11	19	copy fasta	PDCD6	chr5	266646	319974
PDCD6_chr5_266646_319974	1/0	c0002	576	158	19	32	88	2	16	copy fasta	PDCD6	chr5	266646	319974
PDCD6_chr5_266646_319974	0/0	c0003	564	24	2	12	7	1	2	copy fasta	PDCD6	chr5	266646	319974
PDCD6_chr5_266646_319974	0/0	c0004	564	13	8	3	1	0	1	copy fasta	PDCD6	chr5	266646	319974
PDCD6_chr5_266646_319974	0/0	c0005	564	7	6	1	0	0	0	copy fasta	PDCD6	chr5	266646	319974
PDCD7_chr15_65112379_65138808	1/1	c0001	1458	196	77	38	51	7	21	copy fasta	PDCD7	chr15	65112379	65138808
PDCD7_chr15_65112379_65138808	0/0	c0002	1461	7	0	7	0	0	0	copy fasta	PDCD7	chr15	65112379	65138808
PDCD7_chr15_65112379_65138808	0/0	c0003	1458	5	5	0	0	0	0	copy fasta	PDCD7	chr15	65112379	65138808
PDCD7_chr15_65112379_65138808	0/0	c0004	1458	2	2	0	0	0	0	copy fasta	PDCD7	chr15	65112379	65138808
PDCD7_chr15_65112379_65138808	0/0	c0005	1458	2	2	0	0	0	0	copy fasta	PDCD7	chr15	65112379	65138808
PDCD7_chr15_65112379_65138808	0/0	c0006	1458	1	1	0	0	0	0	copy fasta	PDCD7	chr15	65112379	65138808
PDCD7_chr15_65112379_65138808	0/0	c0007	1458	1	1	0	0	0	0	copy fasta	PDCD7	chr15	65112379	65138808
PDCD7_chr15_65112379_65138808	0/0	c0008	1458	1	0	0	0	1	0	copy fasta	PDCD7	chr15	65112379	65138808
PDCD7_chr15_65112379_65138808	0/0	c0009	1458	1	0	0	0	0	1	copy fasta	PDCD7	chr15	65112379	65138808
PDCD7_chr15_65112379_65138808	0/0	c0010	1458	1	0	0	1	0	0	copy fasta	PDCD7	chr15	65112379	65138808
PDCD7_chr15_65112379_65138808	0/0	c0011	1458	1	0	1	0	0	0	copy fasta	PDCD7	chr15	65112379	65138808
PDCL2_chr4_55551519_55597245	1/1	c0001	726	367	90	61	164	14	36	copy fasta	PDCL2	chr4	55551519	55597245
PDCL2_chr4_55551519_55597245	0/0	c0002	726	5	4	1	0	0	0	copy fasta	PDCL2	chr4	55551519	55597245
PDCL2_chr4_55551519_55597245	0/0	c0003	726	2	0	0	2	0	0	copy fasta	PDCL2	chr4	55551519	55597245
PDCL2_chr4_55551519_55597245	0/0	c0004	726	1	1	0	0	0	0	copy fasta	PDCL2	chr4	55551519	55597245
PDCL2_chr4_55551519_55597245	0/0	c0005	726	1	1	0	0	0	0	copy fasta	PDCL2	chr4	55551519	55597245
PDCL3_chr2_100557993_100581739	0/1	c0001	720	294	58	36	156	8	35	copy fasta	PDCL3	chr2	100557993	100581739
PDCL3_chr2_100557993_100581739	1/0	c0002	720	93	31	34	4	10	13	copy fasta	PDCL3	chr2	100557993	100581739
PDCL3_chr2_100557993_100581739	0/0	c0003	720	3	3	0	0	0	0	copy fasta	PDCL3	chr2	100557993	100581739
PDCL3_chr2_100557993_100581739	0/0	c0004	720	2	0	0	2	0	0	copy fasta	PDCL3	chr2	100557993	100581739
PDCL3_chr2_100557993_100581739	0/0	c0005	720	1	1	0	0	0	0	copy fasta	PDCL3	chr2	100557993	100581739
PDCL3_chr2_100557993_100581739	0/0	c0006	720	1	0	0	1	0	0	copy fasta	PDCL3	chr2	100557993	100581739
PDCL3_chr2_100557993_100581739	0/0	c0007	720	1	0	0	1	0	0	copy fasta	PDCL3	chr2	100557993	100581739
PDCL3_chr2_100557993_100581739	0/0	c0008	720	1	1	0	0	0	0	copy fasta	PDCL3	chr2	100557993	100581739
PDCL_chr9_122813097_122833588	1/1	c0001	906	405	91	69	185	12	46	copy fasta	PDCL	chr9	122813097	122833588
PDCL_chr9_122813097_122833588	0/0	c0002	906	9	0	1	8	0	0	copy fasta	PDCL	chr9	122813097	122833588
PDCL_chr9_122813097_122833588	0/0	c0003	906	7	7	0	0	0	0	copy fasta	PDCL	chr9	122813097	122833588
PDCL_chr9_122813097_122833588	0/0	c0004	906	1	0	0	1	0	0	copy fasta	PDCL	chr9	122813097	122833588
PDC_chr1_186438566_186466114	1/1	c0001	741	401	92	72	187	14	34	copy fasta	PDC	chr1	186438566	186466114
PDC_chr1_186438566_186466114	0/0	c0002	741	2	0	0	2	0	0	copy fasta	PDC	chr1	186438566	186466114
PDC_chr1_186438566_186466114	0/0	c0003	741	1	0	0	1	0	0	copy fasta	PDC	chr1	186438566	186466114
PDE10A_chr6_165322289_165668241	1/1	c0001	3168	108	27	28	30	2	19	copy fasta	PDE10A	chr6	165322289	165668241
PDE10A_chr6_165322289_165668241	0/0	c0002	3168	29	13	9	2	2	3	copy fasta	PDE10A	chr6	165322289	165668241
PDE10A_chr6_165322289_165668241	0/0	c0003	3168	20	1	7	12	0	0	copy fasta	PDE10A	chr6	165322289	165668241
PDE10A_chr6_165322289_165668241	0/0	c0004	3168	13	2	6	0	1	4	copy fasta	PDE10A	chr6	165322289	165668241
PDE10A_chr6_165322289_165668241	0/0	c0005	3168	12	12	0	0	0	0	copy fasta	PDE10A	chr6	165322289	165668241
PDE10A_chr6_165322289_165668241	0/0	c0006	3168	3	2	1	0	0	0	copy fasta	PDE10A	chr6	165322289	165668241
PDE10A_chr6_165322289_165668241	0/0	c0007	3168	2	2	0	0	0	0	copy fasta	PDE10A	chr6	165322289	165668241
PDE10A_chr6_165322289_165668241	0/0	c0008	3168	2	2	0	0	0	0	copy fasta	PDE10A	chr6	165322289	165668241
PDE10A_chr6_165322289_165668241	0/0	c0009	3168	2	2	0	0	0	0	copy fasta	PDE10A	chr6	165322289	165668241