JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PDE10A_chr6_165322289_165668241	0/0	c0010	3168	2	2	0	0	0	0	copy fasta	PDE10A	chr6	165322289	165668241
PDE10A_chr6_165322289_165668241	0/0	c0011	3168	2	2	0	0	0	0	copy fasta	PDE10A	chr6	165322289	165668241
PDE10A_chr6_165322289_165668241	0/0	c0012	3168	2	2	0	0	0	0	copy fasta	PDE10A	chr6	165322289	165668241
PDE10A_chr6_165322289_165668241	0/0	c0013	3168	2	1	1	0	0	0	copy fasta	PDE10A	chr6	165322289	165668241
PDE10A_chr6_165322289_165668241	0/0	c0014	3168	2	2	0	0	0	0	copy fasta	PDE10A	chr6	165322289	165668241
PDE10A_chr6_165322289_165668241	0/0	c0015	3168	2	2	0	0	0	0	copy fasta	PDE10A	chr6	165322289	165668241
PDE10A_chr6_165322289_165668241	0/0	c0016	3168	1	0	0	0	1	0	copy fasta	PDE10A	chr6	165322289	165668241
PDE10A_chr6_165322289_165668241	0/0	c0017	3168	1	0	0	0	0	1	copy fasta	PDE10A	chr6	165322289	165668241
PDE10A_chr6_165322289_165668241	0/0	c0018	3168	1	0	1	0	0	0	copy fasta	PDE10A	chr6	165322289	165668241
PDE10A_chr6_165322289_165668241	0/0	c0019	3168	1	1	0	0	0	0	copy fasta	PDE10A	chr6	165322289	165668241
PDE10A_chr6_165322289_165668241	0/0	c0020	3168	1	1	0	0	0	0	copy fasta	PDE10A	chr6	165322289	165668241
PDE10A_chr6_165322289_165668241	0/0	c0021	3168	1	1	0	0	0	0	copy fasta	PDE10A	chr6	165322289	165668241
PDE10A_chr6_165322289_165668241	0/0	c0022	3168	1	0	0	0	0	1	copy fasta	PDE10A	chr6	165322289	165668241
PDE10A_chr6_165322289_165668241	0/0	c0023	3168	1	0	1	0	0	0	copy fasta	PDE10A	chr6	165322289	165668241
PDE10A_chr6_165322289_165668241	0/0	c0024	3168	1	1	0	0	0	0	copy fasta	PDE10A	chr6	165322289	165668241
PDE10A_chr6_165322289_165668241	0/0	c0025	3168	1	1	0	0	0	0	copy fasta	PDE10A	chr6	165322289	165668241
PDE10A_chr6_165322289_165668241	0/0	c0026	3168	1	1	0	0	0	0	copy fasta	PDE10A	chr6	165322289	165668241
PDE10A_chr6_165322289_165668241	0/0	c0027	3168	1	1	0	0	0	0	copy fasta	PDE10A	chr6	165322289	165668241
PDE10A_chr6_165322289_165668241	0/0	c0028	3168	1	1	0	0	0	0	copy fasta	PDE10A	chr6	165322289	165668241
PDE10A_chr6_165322289_165668241	0/0	c0029	3168	1	1	0	0	0	0	copy fasta	PDE10A	chr6	165322289	165668241
PDE10A_chr6_165322289_165668241	0/0	c0030	3168	1	1	0	0	0	0	copy fasta	PDE10A	chr6	165322289	165668241
PDE10A_chr6_165322289_165668241	0/0	c0031	3168	1	1	0	0	0	0	copy fasta	PDE10A	chr6	165322289	165668241
PDE10A_chr6_165322289_165668241	0/0	c0032	3168	1	1	0	0	0	0	copy fasta	PDE10A	chr6	165322289	165668241
PDE10A_chr6_165322289_165668241	0/0	c0033	3168	1	0	0	1	0	0	copy fasta	PDE10A	chr6	165322289	165668241
PDE10A_chr6_165322289_165668241	0/0	c0034	3168	1	0	0	1	0	0	copy fasta	PDE10A	chr6	165322289	165668241
PDE11A_chr2_177618244_178077777	0/0	c0001	2802	40	26	4	5	0	5	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	c0002	2805	31	9	3	12	1	6	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	c0003	2802	25	14	1	7	0	3	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	c0004	2805	21	0	10	7	2	2	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	c0005	2802	7	6	1	0	0	0	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	c0006	2802	4	0	2	0	1	1	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	c0007	2802	4	0	0	4	0	0	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	c0008	2802	4	4	0	0	0	0	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	c0009	2802	3	3	0	0	0	0	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	c0010	2802	3	2	1	0	0	0	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/1	c0011	2805	2	0	1	0	0	0	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	c0012	2802	2	1	0	0	0	1	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	c0013	2805	2	0	2	0	0	0	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	c0014	2802	2	0	2	0	0	0	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	c0015	2805	1	1	0	0	0	0	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	c0016	2802	1	1	0	0	0	0	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	c0017	2802	1	1	0	0	0	0	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	c0018	2805	1	0	0	1	0	0	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	c0019	2805	1	0	0	0	0	1	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	c0020	2805	1	0	0	1	0	0	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	c0021	2802	1	1	0	0	0	0	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	c0022	2805	1	0	1	0	0	0	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	c0023	2805	1	0	0	1	0	0	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	c0024	2802	1	1	0	0	0	0	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	c0025	2802	1	1	0	0	0	0	copy fasta	PDE11A	chr2	177618244	178077777