JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PDE11A_chr2_177618244_178077777	0/0	c0026	2805	1	0	0	1	0	0	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	c0027	2802	1	1	0	0	0	0	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	c0028	2802	1	0	0	1	0	0	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	c0029	2805	1	0	0	0	0	1	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	1/0	c0030	2802	1	0	0	0	0	0	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	c0031	2805	1	1	0	0	0	0	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	c0032	2802	1	1	0	0	0	0	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	c0033	2805	1	1	0	0	0	0	copy fasta	PDE11A	chr2	177618244	178077777
PDE11A_chr2_177618244_178077777	0/0	c0034	2805	1	1	0	0	0	0	copy fasta	PDE11A	chr2	177618244	178077777
PDE12_chr3_57551274_57571848	1/1	c0001	1830	240	82	40	89	6	21	copy fasta	PDE12	chr3	57551274	57571848
PDE12_chr3_57551274_57571848	0/0	c0002	1830	138	12	34	72	8	12	copy fasta	PDE12	chr3	57551274	57571848
PDE12_chr3_57551274_57571848	0/0	c0003	1830	3	0	0	1	0	2	copy fasta	PDE12	chr3	57551274	57571848
PDE12_chr3_57551274_57571848	0/0	c0004	1830	2	0	0	0	0	2	copy fasta	PDE12	chr3	57551274	57571848
PDE12_chr3_57551274_57571848	0/0	c0005	1830	1	1	0	0	0	0	copy fasta	PDE12	chr3	57551274	57571848
PDE12_chr3_57551274_57571848	0/0	c0006	1830	1	0	0	1	0	0	copy fasta	PDE12	chr3	57551274	57571848
PDE12_chr3_57551274_57571848	0/0	c0007	1830	1	1	0	0	0	0	copy fasta	PDE12	chr3	57551274	57571848
PDE12_chr3_57551274_57571848	0/0	c0008	1830	1	0	0	0	0	1	copy fasta	PDE12	chr3	57551274	57571848
PDE12_chr3_57551274_57571848	0/0	c0009	1830	1	0	0	1	0	0	copy fasta	PDE12	chr3	57551274	57571848
PDE1A_chr2_182135041_182432036	1/1	c0001	1590	258	71	41	102	14	28	copy fasta	PDE1A	chr2	182135041	182432036
PDE1A_chr2_182135041_182432036	0/0	c0002	1590	2	0	2	0	0	0	copy fasta	PDE1A	chr2	182135041	182432036
PDE1A_chr2_182135041_182432036	0/0	c0003	1590	1	0	0	1	0	0	copy fasta	PDE1A	chr2	182135041	182432036
PDE1A_chr2_182135041_182432036	0/0	c0004	1590	1	1	0	0	0	0	copy fasta	PDE1A	chr2	182135041	182432036
PDE1A_chr2_182135041_182432036	0/0	c0005	1590	1	0	1	0	0	0	copy fasta	PDE1A	chr2	182135041	182432036
PDE1A_chr2_182135041_182432036	0/0	c0006	1590	1	0	0	1	0	0	copy fasta	PDE1A	chr2	182135041	182432036
PDE1B_chr12_54544601_54584239	1/0	c0001	1611	234	56	35	112	12	18	copy fasta	PDE1B	chr12	54544601	54584239
PDE1B_chr12_54544601_54584239	0/1	c0002	1611	186	40	41	75	3	26	copy fasta	PDE1B	chr12	54544601	54584239
PDE1B_chr12_54544601_54584239	0/0	c0003	1611	3	0	0	3	0	0	copy fasta	PDE1B	chr12	54544601	54584239
PDE1B_chr12_54544601_54584239	0/0	c0004	1611	2	2	0	0	0	0	copy fasta	PDE1B	chr12	54544601	54584239
PDE1B_chr12_54544601_54584239	0/0	c0005	1611	1	1	0	0	0	0	copy fasta	PDE1B	chr12	54544601	54584239
PDE1B_chr12_54544601_54584239	0/0	c0006	1611	1	0	1	0	0	0	copy fasta	PDE1B	chr12	54544601	54584239
PDE1B_chr12_54544601_54584239	0/0	c0007	1611	1	0	1	0	0	0	copy fasta	PDE1B	chr12	54544601	54584239
PDE1B_chr12_54544601_54584239	0/0	c0008	1611	1	0	0	0	1	0	copy fasta	PDE1B	chr12	54544601	54584239
PDE1B_chr12_54544601_54584239	0/0	c0009	1611	1	1	0	0	0	0	copy fasta	PDE1B	chr12	54544601	54584239
PDE1C_chr7_31746179_32075407	0/1	c0001	2130	153	53	26	52	2	19	copy fasta	PDE1C	chr7	31746179	32075407
PDE1C_chr7_31746179_32075407	0/0	c0002	2130	32	12	5	10	1	4	copy fasta	PDE1C	chr7	31746179	32075407
PDE1C_chr7_31746179_32075407	0/0	c0003	2130	17	8	4	4	0	1	copy fasta	PDE1C	chr7	31746179	32075407
PDE1C_chr7_31746179_32075407	0/0	c0004	2130	17	2	3	6	2	4	copy fasta	PDE1C	chr7	31746179	32075407
PDE1C_chr7_31746179_32075407	0/0	c0005	2130	16	7	7	2	0	0	copy fasta	PDE1C	chr7	31746179	32075407
PDE1C_chr7_31746179_32075407	0/0	c0006	2130	4	3	1	0	0	0	copy fasta	PDE1C	chr7	31746179	32075407
PDE1C_chr7_31746179_32075407	0/0	c0007	2130	2	0	0	2	0	0	copy fasta	PDE1C	chr7	31746179	32075407
PDE1C_chr7_31746179_32075407	0/0	c0008	2130	2	2	0	0	0	0	copy fasta	PDE1C	chr7	31746179	32075407
PDE1C_chr7_31746179_32075407	0/0	c0009	2130	2	2	0	0	0	0	copy fasta	PDE1C	chr7	31746179	32075407
PDE1C_chr7_31746179_32075407	0/0	c0010	2130	2	0	0	1	0	1	copy fasta	PDE1C	chr7	31746179	32075407
PDE1C_chr7_31746179_32075407	0/0	c0011	2130	1	1	0	0	0	0	copy fasta	PDE1C	chr7	31746179	32075407
PDE1C_chr7_31746179_32075407	1/0	c0012	2130	1	0	0	0	0	0	copy fasta	PDE1C	chr7	31746179	32075407
PDE1C_chr7_31746179_32075407	0/0	c0013	2130	1	1	0	0	0	0	copy fasta	PDE1C	chr7	31746179	32075407
PDE1C_chr7_31746179_32075407	0/0	c0014	2130	1	0	1	0	0	0	copy fasta	PDE1C	chr7	31746179	32075407
PDE1C_chr7_31746179_32075407	0/0	c0015	2130	1	1	0	0	0	0	copy fasta	PDE1C	chr7	31746179	32075407
PDE1C_chr7_31746179_32075407	0/0	c0016	2130	1	0	0	0	1	0	copy fasta	PDE1C	chr7	31746179	32075407
PDE1C_chr7_31746179_32075407	0/0	c0017	2130	1	1	0	0	0	0	copy fasta	PDE1C	chr7	31746179	32075407