JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PDE1C_chr7_31746179_32075407	0/0	c0018	2130	1	1	0	0	0	0	copy fasta	PDE1C	chr7	31746179	32075407
PDE1C_chr7_31746179_32075407	0/0	c0019	2130	1	1	0	0	0	0	copy fasta	PDE1C	chr7	31746179	32075407
PDE1C_chr7_31746179_32075407	0/0	c0020	2130	1	1	0	0	0	0	copy fasta	PDE1C	chr7	31746179	32075407
PDE1C_chr7_31746179_32075407	0/0	c0021	2130	1	0	0	1	0	0	copy fasta	PDE1C	chr7	31746179	32075407
PDE1C_chr7_31746179_32075407	0/0	c0022	2130	1	0	0	1	0	0	copy fasta	PDE1C	chr7	31746179	32075407
PDE1C_chr7_31746179_32075407	0/0	c0023	2130	1	0	0	0	0	1	copy fasta	PDE1C	chr7	31746179	32075407
PDE1C_chr7_31746179_32075407	0/0	c0024	2130	1	0	0	1	0	0	copy fasta	PDE1C	chr7	31746179	32075407
PDE1C_chr7_31746179_32075407	0/0	c0025	2130	1	0	1	0	0	0	copy fasta	PDE1C	chr7	31746179	32075407
PDE2A_chr11_72571141_72679422	0/0	c0001	2826	100	36	14	41	3	6	copy fasta	PDE2A	chr11	72571141	72679422
PDE2A_chr11_72571141_72679422	0/0	c0002	2826	69	8	24	21	5	11	copy fasta	PDE2A	chr11	72571141	72679422
PDE2A_chr11_72571141_72679422	0/1	c0003	2826	62	21	11	23	0	6	copy fasta	PDE2A	chr11	72571141	72679422
PDE2A_chr11_72571141_72679422	0/0	c0004	2826	24	0	7	12	0	5	copy fasta	PDE2A	chr11	72571141	72679422
PDE2A_chr11_72571141_72679422	1/0	c0005	2826	13	11	1	0	0	0	copy fasta	PDE2A	chr11	72571141	72679422
PDE2A_chr11_72571141_72679422	0/0	c0006	2826	4	4	0	0	0	0	copy fasta	PDE2A	chr11	72571141	72679422
PDE2A_chr11_72571141_72679422	0/0	c0007	2826	3	3	0	0	0	0	copy fasta	PDE2A	chr11	72571141	72679422
PDE2A_chr11_72571141_72679422	0/0	c0008	2826	2	2	0	0	0	0	copy fasta	PDE2A	chr11	72571141	72679422
PDE2A_chr11_72571141_72679422	0/0	c0009	2826	2	0	2	0	0	0	copy fasta	PDE2A	chr11	72571141	72679422
PDE2A_chr11_72571141_72679422	0/0	c0010	2826	2	0	1	0	1	0	copy fasta	PDE2A	chr11	72571141	72679422
PDE2A_chr11_72571141_72679422	0/0	c0011	2826	1	1	0	0	0	0	copy fasta	PDE2A	chr11	72571141	72679422
PDE2A_chr11_72571141_72679422	0/0	c0012	2826	1	0	0	1	0	0	copy fasta	PDE2A	chr11	72571141	72679422
PDE2A_chr11_72571141_72679422	0/0	c0013	2826	1	1	0	0	0	0	copy fasta	PDE2A	chr11	72571141	72679422
PDE2A_chr11_72571141_72679422	0/0	c0014	2826	1	0	0	1	0	0	copy fasta	PDE2A	chr11	72571141	72679422
PDE2A_chr11_72571141_72679422	0/0	c0015	2826	1	1	0	0	0	0	copy fasta	PDE2A	chr11	72571141	72679422
PDE2A_chr11_72571141_72679422	0/0	c0016	2826	1	0	0	0	1	0	copy fasta	PDE2A	chr11	72571141	72679422
PDE2A_chr11_72571141_72679422	0/0	c0017	2826	1	1	0	0	0	0	copy fasta	PDE2A	chr11	72571141	72679422
PDE2A_chr11_72571141_72679422	0/0	c0018	2826	1	0	0	0	0	1	copy fasta	PDE2A	chr11	72571141	72679422
PDE2A_chr11_72571141_72679422	0/0	c0019	2826	1	1	0	0	0	0	copy fasta	PDE2A	chr11	72571141	72679422
PDE2A_chr11_72571141_72679422	0/0	c0020	2826	1	0	0	0	0	1	copy fasta	PDE2A	chr11	72571141	72679422
PDE2A_chr11_72571141_72679422	0/0	c0021	2826	1	0	0	1	0	0	copy fasta	PDE2A	chr11	72571141	72679422
PDE3A_chr12_20363537_20693583	0/1	c0001	3426	121	32	32	27	9	20	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	c0002	3426	40	13	10	11	3	3	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	1/0	c0003	3426	11	6	3	0	0	1	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	c0004	3426	10	9	1	0	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	c0005	3426	2	0	2	0	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	c0006	3426	2	0	0	2	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	c0007	3426	1	1	0	0	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	c0008	3426	1	1	0	0	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	c0009	3426	1	1	0	0	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	c0010	3426	1	0	0	1	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	c0011	3426	1	1	0	0	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	c0012	3426	1	1	0	0	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	c0013	3426	1	1	0	0	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	c0014	3426	1	1	0	0	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	c0015	3426	1	1	0	0	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	c0016	3426	1	1	0	0	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	c0017	3426	1	0	0	1	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3A_chr12_20363537_20693583	0/0	c0018	3426	1	1	0	0	0	0	copy fasta	PDE3A	chr12	20363537	20693583
PDE3B_chr11_14638804_14877044	0/1	c0001	3339	220	61	39	97	5	17	copy fasta	PDE3B	chr11	14638804	14877044
PDE3B_chr11_14638804_14877044	1/0	c0002	3339	87	16	9	46	3	12	copy fasta	PDE3B	chr11	14638804	14877044
PDE3B_chr11_14638804_14877044	0/0	c0003	3339	8	0	0	7	0	1	copy fasta	PDE3B	chr11	14638804	14877044