JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PDE3B_chr11_14638804_14877044	0/0	c0004	3339	3	3	0	0	0	0	copy fasta	PDE3B	chr11	14638804	14877044
PDE3B_chr11_14638804_14877044	0/0	c0005	3339	2	1	1	0	0	0	copy fasta	PDE3B	chr11	14638804	14877044
PDE3B_chr11_14638804_14877044	0/0	c0006	3339	1	0	0	1	0	0	copy fasta	PDE3B	chr11	14638804	14877044
PDE3B_chr11_14638804_14877044	0/0	c0007	3339	1	1	0	0	0	0	copy fasta	PDE3B	chr11	14638804	14877044
PDE3B_chr11_14638804_14877044	0/0	c0008	3339	1	1	0	0	0	0	copy fasta	PDE3B	chr11	14638804	14877044
PDE3B_chr11_14638804_14877044	0/0	c0009	3339	1	1	0	0	0	0	copy fasta	PDE3B	chr11	14638804	14877044
PDE3B_chr11_14638804_14877044	0/0	c0010	3339	1	0	1	0	0	0	copy fasta	PDE3B	chr11	14638804	14877044
PDE3B_chr11_14638804_14877044	0/0	c0011	3339	1	0	0	1	0	0	copy fasta	PDE3B	chr11	14638804	14877044
PDE3B_chr11_14638804_14877044	0/0	c0012	3339	1	1	0	0	0	0	copy fasta	PDE3B	chr11	14638804	14877044
PDE3B_chr11_14638804_14877044	0/0	c0013	3339	1	0	0	1	0	0	copy fasta	PDE3B	chr11	14638804	14877044
PDE3B_chr11_14638804_14877044	0/0	c0014	3329	1	0	0	1	0	0	copy fasta	PDE3B	chr11	14638804	14877044
PDE3B_chr11_14638804_14877044	0/0	c0015	3339	1	0	0	1	0	0	copy fasta	PDE3B	chr11	14638804	14877044
PDE3B_chr11_14638804_14877044	0/0	c0016	3339	1	1	0	0	0	0	copy fasta	PDE3B	chr11	14638804	14877044
PDE3B_chr11_14638804_14877044	0/0	c0017	3339	1	0	0	1	0	0	copy fasta	PDE3B	chr11	14638804	14877044
PDE4A_chr19_10415538_10474630	1/0	c0001	2661	214	52	32	100	8	21	copy fasta	PDE4A	chr19	10415538	10474630
PDE4A_chr19_10415538_10474630	0/1	c0002	2661	60	19	13	17	2	8	copy fasta	PDE4A	chr19	10415538	10474630
PDE4A_chr19_10415538_10474630	0/0	c0003	2661	13	0	7	4	2	0	copy fasta	PDE4A	chr19	10415538	10474630
PDE4A_chr19_10415538_10474630	0/0	c0004	2661	9	0	0	9	0	0	copy fasta	PDE4A	chr19	10415538	10474630
PDE4A_chr19_10415538_10474630	0/0	c0005	2661	7	7	0	0	0	0	copy fasta	PDE4A	chr19	10415538	10474630
PDE4A_chr19_10415538_10474630	0/0	c0006	2661	4	4	0	0	0	0	copy fasta	PDE4A	chr19	10415538	10474630
PDE4A_chr19_10415538_10474630	0/0	c0007	2661	2	0	0	0	0	2	copy fasta	PDE4A	chr19	10415538	10474630
PDE4A_chr19_10415538_10474630	0/0	c0008	2661	2	2	0	0	0	0	copy fasta	PDE4A	chr19	10415538	10474630
PDE4A_chr19_10415538_10474630	0/0	c0009	2661	2	0	0	2	0	0	copy fasta	PDE4A	chr19	10415538	10474630
PDE4A_chr19_10415538_10474630	0/0	c0010	2661	2	0	0	0	0	2	copy fasta	PDE4A	chr19	10415538	10474630
PDE4A_chr19_10415538_10474630	0/0	c0011	2661	1	1	0	0	0	0	copy fasta	PDE4A	chr19	10415538	10474630
PDE4A_chr19_10415538_10474630	0/0	c0012	2661	1	0	0	0	0	1	copy fasta	PDE4A	chr19	10415538	10474630
PDE4A_chr19_10415538_10474630	0/0	c0013	2661	1	1	0	0	0	0	copy fasta	PDE4A	chr19	10415538	10474630
PDE4A_chr19_10415538_10474630	0/0	c0014	2661	1	1	0	0	0	0	copy fasta	PDE4A	chr19	10415538	10474630
PDE4A_chr19_10415538_10474630	0/0	c0015	2661	1	0	1	0	0	0	copy fasta	PDE4A	chr19	10415538	10474630
PDE4A_chr19_10415538_10474630	0/0	c0016	2661	1	0	1	0	0	0	copy fasta	PDE4A	chr19	10415538	10474630
PDE4A_chr19_10415538_10474630	0/0	c0017	2661	1	1	0	0	0	0	copy fasta	PDE4A	chr19	10415538	10474630
PDE4B_chr1_65787895_66379574	0/0	c0001	2211	71	37	20	7	0	7	copy fasta	PDE4B	chr1	65787895	66379574
PDE4B_chr1_65787895_66379574	0/0	c0002	2211	45	6	15	15	2	7	copy fasta	PDE4B	chr1	65787895	66379574
PDE4B_chr1_65787895_66379574	0/0	c0003	2211	2	1	1	0	0	0	copy fasta	PDE4B	chr1	65787895	66379574
PDE4C_chr19_18202965_18231438	1/0	c0001	2043	217	32	31	122	3	28	copy fasta	PDE4C	chr19	18202965	18231438
PDE4C_chr19_18202965_18231438	0/0	c0002	2043	84	14	25	31	6	8	copy fasta	PDE4C	chr19	18202965	18231438
PDE4C_chr19_18202965_18231438	0/1	c0003	2043	68	23	15	18	3	8	copy fasta	PDE4C	chr19	18202965	18231438
PDE4C_chr19_18202965_18231438	0/0	c0004	2043	7	7	0	0	0	0	copy fasta	PDE4C	chr19	18202965	18231438
PDE4C_chr19_18202965_18231438	0/0	c0005	2043	6	5	1	0	0	0	copy fasta	PDE4C	chr19	18202965	18231438
PDE4C_chr19_18202965_18231438	0/0	c0006	2043	3	3	0	0	0	0	copy fasta	PDE4C	chr19	18202965	18231438
PDE4C_chr19_18202965_18231438	0/0	c0007	2043	1	1	0	0	0	0	copy fasta	PDE4C	chr19	18202965	18231438
PDE4C_chr19_18202965_18231438	0/0	c0008	2043	1	0	0	1	0	0	copy fasta	PDE4C	chr19	18202965	18231438
PDE4C_chr19_18202965_18231438	0/0	c0009	2043	1	1	0	0	0	0	copy fasta	PDE4C	chr19	18202965	18231438
PDE4C_chr19_18202965_18231438	0/0	c0010	2043	1	1	0	0	0	0	copy fasta	PDE4C	chr19	18202965	18231438
PDE4C_chr19_18202965_18231438	0/0	c0011	2043	1	0	1	0	0	0	copy fasta	PDE4C	chr19	18202965	18231438
PDE4C_chr19_18202965_18231438	0/0	c0012	2043	1	0	1	0	0	0	copy fasta	PDE4C	chr19	18202965	18231438
PDE4C_chr19_18202965_18231438	0/0	c0013	2043	1	1	0	0	0	0	copy fasta	PDE4C	chr19	18202965	18231438
PDE4C_chr19_18202965_18231438	0/0	c0014	2043	1	1	0	0	0	0	copy fasta	PDE4C	chr19	18202965	18231438
PDE4C_chr19_18202965_18231438	0/0	c0015	2043	1	1	0	0	0	0	copy fasta	PDE4C	chr19	18202965	18231438
PDE4DIP_chr1_148839428_149038016	0/0	c0001	7239	3	0	2	0	0	1	copy fasta	PDE4DIP	chr1	148839428	149038016