JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PDE6A_chr5_149852953_149949793	0/0	c0014	2583	2	2	0	0	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	c0015	2583	2	2	0	0	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	c0016	2583	2	0	1	0	1	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	c0017	2583	1	0	0	1	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	c0018	2583	1	1	0	0	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	c0019	2583	1	1	0	0	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	c0020	2583	1	0	1	0	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	c0021	2583	1	0	0	1	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	c0022	2583	1	1	0	0	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	c0023	2583	1	0	0	0	0	1	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	c0024	2583	1	0	0	0	0	1	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	c0025	2583	1	0	0	0	0	1	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	c0026	2583	1	1	0	0	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	c0027	2583	1	1	0	0	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	c0028	2583	1	1	0	0	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	c0029	2583	1	1	0	0	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	c0030	2583	1	1	0	0	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	c0031	2583	1	0	1	0	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	c0032	2583	1	1	0	0	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	c0033	2583	1	0	0	1	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	c0034	2583	1	0	1	0	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6B_chr4_620573_675782	0/1	c0001	2565	234	43	44	115	6	25	copy fasta	PDE6B	chr4	620573	675782
PDE6B_chr4_620573_675782	0/0	c0002	2565	13	9	2	0	2	0	copy fasta	PDE6B	chr4	620573	675782
PDE6B_chr4_620573_675782	0/0	c0003	2565	10	8	2	0	0	0	copy fasta	PDE6B	chr4	620573	675782
PDE6B_chr4_620573_675782	0/0	c0004	2565	7	7	0	0	0	0	copy fasta	PDE6B	chr4	620573	675782
PDE6B_chr4_620573_675782	0/0	c0005	2565	4	4	0	0	0	0	copy fasta	PDE6B	chr4	620573	675782
PDE6B_chr4_620573_675782	0/0	c0006	2565	4	0	0	4	0	0	copy fasta	PDE6B	chr4	620573	675782
PDE6B_chr4_620573_675782	0/0	c0007	2565	3	0	2	0	0	1	copy fasta	PDE6B	chr4	620573	675782
PDE6B_chr4_620573_675782	0/0	c0008	2565	3	3	0	0	0	0	copy fasta	PDE6B	chr4	620573	675782
PDE6B_chr4_620573_675782	0/0	c0009	2565	3	3	0	0	0	0	copy fasta	PDE6B	chr4	620573	675782
PDE6B_chr4_620573_675782	0/0	c0010	2565	3	0	0	3	0	0	copy fasta	PDE6B	chr4	620573	675782
PDE6B_chr4_620573_675782	0/0	c0011	2565	2	2	0	0	0	0	copy fasta	PDE6B	chr4	620573	675782
PDE6B_chr4_620573_675782	0/0	c0012	2565	2	2	0	0	0	0	copy fasta	PDE6B	chr4	620573	675782
PDE6B_chr4_620573_675782	0/0	c0013	2565	2	2	0	0	0	0	copy fasta	PDE6B	chr4	620573	675782
PDE6B_chr4_620573_675782	0/0	c0014	2565	1	0	0	1	0	0	copy fasta	PDE6B	chr4	620573	675782
PDE6B_chr4_620573_675782	0/0	c0015	2565	1	0	1	0	0	0	copy fasta	PDE6B	chr4	620573	675782
PDE6B_chr4_620573_675782	0/0	c0016	2565	1	0	0	0	0	1	copy fasta	PDE6B	chr4	620573	675782
PDE6B_chr4_620573_675782	0/0	c0017	2565	1	1	0	0	0	0	copy fasta	PDE6B	chr4	620573	675782
PDE6B_chr4_620573_675782	0/0	c0018	2565	1	0	0	1	0	0	copy fasta	PDE6B	chr4	620573	675782
PDE6B_chr4_620573_675782	0/0	c0019	2565	1	1	0	0	0	0	copy fasta	PDE6B	chr4	620573	675782
PDE6B_chr4_620573_675782	0/0	c0020	2565	1	1	0	0	0	0	copy fasta	PDE6B	chr4	620573	675782
PDE6B_chr4_620573_675782	0/0	c0021	2565	1	0	0	1	0	0	copy fasta	PDE6B	chr4	620573	675782
PDE6B_chr4_620573_675782	0/0	c0022	2565	1	0	0	1	0	0	copy fasta	PDE6B	chr4	620573	675782
PDE6B_chr4_620573_675782	0/0	c0023	2565	1	1	0	0	0	0	copy fasta	PDE6B	chr4	620573	675782
PDE6B_chr4_620573_675782	0/0	c0024	2565	1	1	0	0	0	0	copy fasta	PDE6B	chr4	620573	675782
PDE6B_chr4_620573_675782	0/0	c0025	2565	1	1	0	0	0	0	copy fasta	PDE6B	chr4	620573	675782
PDE6B_chr4_620573_675782	0/0	c0026	2565	1	0	1	0	0	0	copy fasta	PDE6B	chr4	620573	675782
PDE6B_chr4_620573_675782	1/0	c0027	2565	1	0	0	0	0	0	copy fasta	PDE6B	chr4	620573	675782
PDE6B_chr4_620573_675782	0/0	c0028	2565	1	1	0	0	0	0	copy fasta	PDE6B	chr4	620573	675782
PDE6B_chr4_620573_675782	0/0	c0029	2565	1	1	0	0	0	0	copy fasta	PDE6B	chr4	620573	675782