JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PDE6B_chr4_620573_675782	0/0	c0030	2565	1	1	0	0	0	0	copy fasta	PDE6B	chr4	620573	675782
PDE6B_chr4_620573_675782	0/0	c0031	2565	1	0	0	0	0	1	copy fasta	PDE6B	chr4	620573	675782
PDE6C_chr10_93607537_93671010	1/0	c0001	2577	153	36	25	62	5	24	copy fasta	PDE6C	chr10	93607537	93671010
PDE6C_chr10_93607537_93671010	0/1	c0002	2577	90	2	21	57	2	7	copy fasta	PDE6C	chr10	93607537	93671010
PDE6C_chr10_93607537_93671010	0/0	c0003	2577	33	16	1	14	0	2	copy fasta	PDE6C	chr10	93607537	93671010
PDE6C_chr10_93607537_93671010	0/0	c0004	2577	19	14	1	3	0	1	copy fasta	PDE6C	chr10	93607537	93671010
PDE6C_chr10_93607537_93671010	0/0	c0005	2577	19	3	2	12	0	2	copy fasta	PDE6C	chr10	93607537	93671010
PDE6C_chr10_93607537_93671010	0/0	c0006	2577	13	0	0	13	0	0	copy fasta	PDE6C	chr10	93607537	93671010
PDE6C_chr10_93607537_93671010	0/0	c0007	2577	7	2	1	4	0	0	copy fasta	PDE6C	chr10	93607537	93671010
PDE6C_chr10_93607537_93671010	0/0	c0008	2577	6	0	3	1	1	1	copy fasta	PDE6C	chr10	93607537	93671010
PDE6C_chr10_93607537_93671010	0/0	c0009	2577	6	0	3	0	2	1	copy fasta	PDE6C	chr10	93607537	93671010
PDE6C_chr10_93607537_93671010	0/0	c0010	2577	4	1	2	0	0	1	copy fasta	PDE6C	chr10	93607537	93671010
PDE6C_chr10_93607537_93671010	0/0	c0011	2577	4	0	2	0	1	1	copy fasta	PDE6C	chr10	93607537	93671010
PDE6C_chr10_93607537_93671010	0/0	c0012	2577	4	4	0	0	0	0	copy fasta	PDE6C	chr10	93607537	93671010
PDE6C_chr10_93607537_93671010	0/0	c0013	2577	3	3	0	0	0	0	copy fasta	PDE6C	chr10	93607537	93671010
PDE6C_chr10_93607537_93671010	0/0	c0014	2577	3	3	0	0	0	0	copy fasta	PDE6C	chr10	93607537	93671010
PDE6C_chr10_93607537_93671010	0/0	c0015	2577	2	2	0	0	0	0	copy fasta	PDE6C	chr10	93607537	93671010
PDE6C_chr10_93607537_93671010	0/0	c0016	2577	2	2	0	0	0	0	copy fasta	PDE6C	chr10	93607537	93671010
PDE6C_chr10_93607537_93671010	0/0	c0017	2577	2	0	2	0	0	0	copy fasta	PDE6C	chr10	93607537	93671010
PDE6C_chr10_93607537_93671010	0/0	c0018	2577	1	0	0	1	0	0	copy fasta	PDE6C	chr10	93607537	93671010
PDE6C_chr10_93607537_93671010	0/0	c0019	2577	1	1	0	0	0	0	copy fasta	PDE6C	chr10	93607537	93671010
PDE6C_chr10_93607537_93671010	0/0	c0020	2577	1	1	0	0	0	0	copy fasta	PDE6C	chr10	93607537	93671010
PDE6C_chr10_93607537_93671010	0/0	c0021	2577	1	0	1	0	0	0	copy fasta	PDE6C	chr10	93607537	93671010
PDE6C_chr10_93607537_93671010	0/0	c0022	2577	1	0	0	1	0	0	copy fasta	PDE6C	chr10	93607537	93671010
PDE6C_chr10_93607537_93671010	0/0	c0023	2577	1	0	0	0	1	0	copy fasta	PDE6C	chr10	93607537	93671010
PDE6C_chr10_93607537_93671010	0/0	c0024	2577	1	0	0	1	0	0	copy fasta	PDE6C	chr10	93607537	93671010
PDE6C_chr10_93607537_93671010	0/0	c0025	2577	1	1	0	0	0	0	copy fasta	PDE6C	chr10	93607537	93671010
PDE6C_chr10_93607537_93671010	0/0	c0026	2577	1	0	0	0	0	1	copy fasta	PDE6C	chr10	93607537	93671010
PDE6C_chr10_93607537_93671010	0/0	c0027	2577	1	0	1	0	0	0	copy fasta	PDE6C	chr10	93607537	93671010
PDE6C_chr10_93607537_93671010	0/0	c0028	2577	1	0	0	1	0	0	copy fasta	PDE6C	chr10	93607537	93671010
PDE6C_chr10_93607537_93671010	0/0	c0029	2577	1	0	1	0	0	0	copy fasta	PDE6C	chr10	93607537	93671010
PDE6C_chr10_93607537_93671010	0/0	c0030	2577	1	0	0	0	0	1	copy fasta	PDE6C	chr10	93607537	93671010
PDE6C_chr10_93607537_93671010	0/0	c0031	2577	1	1	0	0	0	0	copy fasta	PDE6C	chr10	93607537	93671010
PDE6D_chr2_231727433_231786282	1/1	c0001	453	263	91	62	60	18	30	copy fasta	PDE6D	chr2	231727433	231786282
PDE6D_chr2_231727433_231786282	0/0	c0002	453	2	2	0	0	0	0	copy fasta	PDE6D	chr2	231727433	231786282
PDE6D_chr2_231727433_231786282	0/0	c0003	453	1	1	0	0	0	0	copy fasta	PDE6D	chr2	231727433	231786282
PDE6G_chr17_81645459_81661542	1/1	c0001	264	426	89	80	187	18	50	copy fasta	PDE6G	chr17	81645459	81661542
PDE6G_chr17_81645459_81661542	0/0	c0002	264	6	0	0	6	0	0	copy fasta	PDE6G	chr17	81645459	81661542
PDE6G_chr17_81645459_81661542	0/0	c0003	264	1	0	0	1	0	0	copy fasta	PDE6G	chr17	81645459	81661542
PDE6G_chr17_81645459_81661542	0/0	c0004	264	1	1	0	0	0	0	copy fasta	PDE6G	chr17	81645459	81661542
PDE6H_chr12_14968042_14986865	1/1	c0001	252	368	80	53	188	11	34	copy fasta	PDE6H	chr12	14968042	14986865
PDE6H_chr12_14968042_14986865	0/0	c0002	252	77	13	19	40	1	4	copy fasta	PDE6H	chr12	14968042	14986865
PDE6H_chr12_14968042_14986865	0/0	c0003	252	2	0	0	0	0	2	copy fasta	PDE6H	chr12	14968042	14986865
PDE6H_chr12_14968042_14986865	0/0	c0004	252	1	1	0	0	0	0	copy fasta	PDE6H	chr12	14968042	14986865
PDE7A_chr8_65709334_65847064	1/1	c0001	1449	234	73	50	72	13	24	copy fasta	PDE7A	chr8	65709334	65847064
PDE7A_chr8_65709334_65847064	0/0	c0002	1449	12	11	1	0	0	0	copy fasta	PDE7A	chr8	65709334	65847064
PDE7A_chr8_65709334_65847064	0/0	c0003	1449	1	0	0	0	1	0	copy fasta	PDE7A	chr8	65709334	65847064
PDE7A_chr8_65709334_65847064	0/0	c0004	1449	1	0	1	0	0	0	copy fasta	PDE7A	chr8	65709334	65847064
PDE7B_chr6_135846701_136200574	1/1	c0001	1353	126	44	30	36	2	12	copy fasta	PDE7B	chr6	135846701	136200574
PDE7B_chr6_135846701_136200574	0/0	c0002	1353	6	6	0	0	0	0	copy fasta	PDE7B	chr6	135846701	136200574