JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PDE7B_chr6_135846701_136200574	0/0	c0003	1353	3	3	0	0	0	0	copy fasta	PDE7B	chr6	135846701	136200574
PDE7B_chr6_135846701_136200574	0/0	c0004	1353	3	3	0	0	0	0	copy fasta	PDE7B	chr6	135846701	136200574
PDE7B_chr6_135846701_136200574	0/0	c0005	1353	2	2	0	0	0	0	copy fasta	PDE7B	chr6	135846701	136200574
PDE7B_chr6_135846701_136200574	0/0	c0006	1353	1	1	0	0	0	0	copy fasta	PDE7B	chr6	135846701	136200574
PDE7B_chr6_135846701_136200574	0/0	c0007	1353	1	1	0	0	0	0	copy fasta	PDE7B	chr6	135846701	136200574
PDE8A_chr15_84976856_85144142	1/1	c0001	2490	284	50	49	138	14	31	copy fasta	PDE8A	chr15	84976856	85144142
PDE8A_chr15_84976856_85144142	0/0	c0002	2490	38	35	3	0	0	0	copy fasta	PDE8A	chr15	84976856	85144142
PDE8A_chr15_84976856_85144142	0/0	c0003	2490	4	0	0	4	0	0	copy fasta	PDE8A	chr15	84976856	85144142
PDE8A_chr15_84976856_85144142	0/0	c0004	2490	3	1	1	0	1	0	copy fasta	PDE8A	chr15	84976856	85144142
PDE8A_chr15_84976856_85144142	0/0	c0005	2490	3	2	1	0	0	0	copy fasta	PDE8A	chr15	84976856	85144142
PDE8A_chr15_84976856_85144142	0/0	c0006	2490	3	0	1	0	1	1	copy fasta	PDE8A	chr15	84976856	85144142
PDE8A_chr15_84976856_85144142	0/0	c0007	2490	2	0	2	0	0	0	copy fasta	PDE8A	chr15	84976856	85144142
PDE8A_chr15_84976856_85144142	0/0	c0008	2490	2	0	0	0	0	2	copy fasta	PDE8A	chr15	84976856	85144142
PDE8A_chr15_84976856_85144142	0/0	c0009	2490	2	0	1	1	0	0	copy fasta	PDE8A	chr15	84976856	85144142
PDE8A_chr15_84976856_85144142	0/0	c0010	2490	1	0	0	1	0	0	copy fasta	PDE8A	chr15	84976856	85144142
PDE8A_chr15_84976856_85144142	0/0	c0011	2490	1	0	0	1	0	0	copy fasta	PDE8A	chr15	84976856	85144142
PDE8A_chr15_84976856_85144142	0/0	c0012	2490	1	0	0	1	0	0	copy fasta	PDE8A	chr15	84976856	85144142
PDE8B_chr5_77205680_77433256	0/1	c0001	2658	222	54	40	96	11	20	copy fasta	PDE8B	chr5	77205680	77433256
PDE8B_chr5_77205680_77433256	1/0	c0002	2658	74	11	12	35	5	10	copy fasta	PDE8B	chr5	77205680	77433256
PDE8B_chr5_77205680_77433256	0/0	c0003	2658	6	6	0	0	0	0	copy fasta	PDE8B	chr5	77205680	77433256
PDE8B_chr5_77205680_77433256	0/0	c0004	2658	3	3	0	0	0	0	copy fasta	PDE8B	chr5	77205680	77433256
PDE8B_chr5_77205680_77433256	0/0	c0005	2658	2	0	0	1	0	1	copy fasta	PDE8B	chr5	77205680	77433256
PDE8B_chr5_77205680_77433256	0/0	c0006	2658	1	1	0	0	0	0	copy fasta	PDE8B	chr5	77205680	77433256
PDE8B_chr5_77205680_77433256	0/0	c0007	2658	1	0	0	1	0	0	copy fasta	PDE8B	chr5	77205680	77433256
PDE8B_chr5_77205680_77433256	0/0	c0008	2658	1	1	0	0	0	0	copy fasta	PDE8B	chr5	77205680	77433256
PDE8B_chr5_77205680_77433256	0/0	c0009	2658	1	1	0	0	0	0	copy fasta	PDE8B	chr5	77205680	77433256
PDE8B_chr5_77205680_77433256	0/0	c0010	2658	1	0	0	0	0	1	copy fasta	PDE8B	chr5	77205680	77433256
PDE8B_chr5_77205680_77433256	0/0	c0011	2658	1	0	0	1	0	0	copy fasta	PDE8B	chr5	77205680	77433256
PDE8B_chr5_77205680_77433256	0/0	c0012	2658	1	1	0	0	0	0	copy fasta	PDE8B	chr5	77205680	77433256
PDE9A_chr21_42648621_42780509	0/1	c0001	1782	137	49	18	45	4	20	copy fasta	PDE9A	chr21	42648621	42780509
PDE9A_chr21_42648621_42780509	1/0	c0002	1782	94	30	24	25	3	11	copy fasta	PDE9A	chr21	42648621	42780509
PDE9A_chr21_42648621_42780509	0/0	c0003	1782	71	1	15	41	7	7	copy fasta	PDE9A	chr21	42648621	42780509
PDE9A_chr21_42648621_42780509	0/0	c0004	1782	6	0	1	5	0	0	copy fasta	PDE9A	chr21	42648621	42780509
PDE9A_chr21_42648621_42780509	0/0	c0005	1782	3	3	0	0	0	0	copy fasta	PDE9A	chr21	42648621	42780509
PDE9A_chr21_42648621_42780509	0/0	c0006	1782	2	0	0	2	0	0	copy fasta	PDE9A	chr21	42648621	42780509
PDE9A_chr21_42648621_42780509	0/0	c0007	1782	2	2	0	0	0	0	copy fasta	PDE9A	chr21	42648621	42780509
PDE9A_chr21_42648621_42780509	0/0	c0008	1782	2	0	0	0	0	2	copy fasta	PDE9A	chr21	42648621	42780509
PDE9A_chr21_42648621_42780509	0/0	c0009	1782	2	2	0	0	0	0	copy fasta	PDE9A	chr21	42648621	42780509
PDE9A_chr21_42648621_42780509	0/0	c0010	1782	1	1	0	0	0	0	copy fasta	PDE9A	chr21	42648621	42780509
PDE9A_chr21_42648621_42780509	0/0	c0011	1782	1	0	0	1	0	0	copy fasta	PDE9A	chr21	42648621	42780509
PDE9A_chr21_42648621_42780509	0/0	c0012	1782	1	1	0	0	0	0	copy fasta	PDE9A	chr21	42648621	42780509
PDE9A_chr21_42648621_42780509	0/0	c0013	1782	1	0	0	1	0	0	copy fasta	PDE9A	chr21	42648621	42780509
PDE9A_chr21_42648621_42780509	0/0	c0014	1782	1	1	0	0	0	0	copy fasta	PDE9A	chr21	42648621	42780509
PDF_chr16_69321913_69335588	1/0	c0001	732	255	49	63	105	12	25	copy fasta	PDF	chr16	69321913	69335588
PDF_chr16_69321913_69335588	0/1	c0002	732	81	36	10	13	5	16	copy fasta	PDF	chr16	69321913	69335588
PDF_chr16_69321913_69335588	0/0	c0003	732	20	10	2	6	1	1	copy fasta	PDF	chr16	69321913	69335588
PDF_chr16_69321913_69335588	0/0	c0004	732	2	0	0	0	0	2	copy fasta	PDF	chr16	69321913	69335588
PDF_chr16_69321913_69335588	0/0	c0005	732	2	2	0	0	0	0	copy fasta	PDF	chr16	69321913	69335588
PDF_chr16_69321913_69335588	0/0	c0006	732	1	0	0	1	0	0	copy fasta	PDF	chr16	69321913	69335588
PDF_chr16_69321913_69335588	0/0	c0007	732	1	0	1	0	0	0	copy fasta	PDF	chr16	69321913	69335588