JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PDF_chr16_69321913_69335588	0/0	c0008	732	1	1	0	0	0	0	copy fasta	PDF	chr16	69321913	69335588
PDF_chr16_69321913_69335588	0/0	c0009	732	1	0	0	1	0	0	copy fasta	PDF	chr16	69321913	69335588
PDGFA_chr7_492258_524846	1/1	c0001	591	201	63	42	66	11	17	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	c0002	591	91	8	16	51	5	11	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	c0003	591	5	1	4	0	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	c0004	591	1	0	0	1	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	c0005	591	1	0	0	1	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	c0006	591	1	0	0	1	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	c0007	591	1	1	0	0	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFA_chr7_492258_524846	0/0	c0008	591	1	1	0	0	0	0	copy fasta	PDGFA	chr7	492258	524846
PDGFB_chr22_39218359_39249982	1/1	c0001	726	366	86	72	142	16	48	copy fasta	PDGFB	chr22	39218359	39249982
PDGFB_chr22_39218359_39249982	0/0	c0002	726	8	8	0	0	0	0	copy fasta	PDGFB	chr22	39218359	39249982
PDGFB_chr22_39218359_39249982	0/0	c0003	726	6	4	2	0	0	0	copy fasta	PDGFB	chr22	39218359	39249982
PDGFB_chr22_39218359_39249982	0/0	c0004	726	2	2	0	0	0	0	copy fasta	PDGFB	chr22	39218359	39249982
PDGFB_chr22_39218359_39249982	0/0	c0005	726	1	0	0	1	0	0	copy fasta	PDGFB	chr22	39218359	39249982
PDGFB_chr22_39218359_39249982	0/0	c0006	726	1	0	0	1	0	0	copy fasta	PDGFB	chr22	39218359	39249982
PDGFB_chr22_39218359_39249982	0/0	c0007	726	1	0	0	1	0	0	copy fasta	PDGFB	chr22	39218359	39249982
PDGFB_chr22_39218359_39249982	0/0	c0008	726	1	0	0	1	0	0	copy fasta	PDGFB	chr22	39218359	39249982
PDGFC_chr4_156755454_156976799	1/1	c0001	1038	160	57	24	60	4	13	copy fasta	PDGFC	chr4	156755454	156976799
PDGFC_chr4_156755454_156976799	0/0	c0002	1038	46	8	4	23	0	11	copy fasta	PDGFC	chr4	156755454	156976799
PDGFC_chr4_156755454_156976799	0/0	c0003	1038	1	1	0	0	0	0	copy fasta	PDGFC	chr4	156755454	156976799
PDGFC_chr4_156755454_156976799	0/0	c0004	1038	1	0	0	1	0	0	copy fasta	PDGFC	chr4	156755454	156976799
PDGFD_chr11_103902189_104169147	1/0	c0001	1113	99	30	15	46	1	6	copy fasta	PDGFD	chr11	103902189	104169147
PDGFD_chr11_103902189_104169147	0/1	c0002	1113	94	35	13	31	3	11	copy fasta	PDGFD	chr11	103902189	104169147
PDGFD_chr11_103902189_104169147	0/0	c0003	1113	4	0	3	0	0	1	copy fasta	PDGFD	chr11	103902189	104169147
PDGFD_chr11_103902189_104169147	0/0	c0004	1113	1	1	0	0	0	0	copy fasta	PDGFD	chr11	103902189	104169147
PDGFD_chr11_103902189_104169147	0/0	c0005	1113	1	0	1	0	0	0	copy fasta	PDGFD	chr11	103902189	104169147
PDGFD_chr11_103902189_104169147	0/0	c0006	1113	1	0	0	1	0	0	copy fasta	PDGFD	chr11	103902189	104169147
PDGFRA_chr4_54224293_54303245	0/1	c0001	3270	158	25	36	68	9	19	copy fasta	PDGFRA	chr4	54224293	54303245
PDGFRA_chr4_54224293_54303245	0/0	c0002	3270	72	20	8	32	5	7	copy fasta	PDGFRA	chr4	54224293	54303245
PDGFRA_chr4_54224293_54303245	0/0	c0003	3270	9	1	5	2	0	1	copy fasta	PDGFRA	chr4	54224293	54303245
PDGFRA_chr4_54224293_54303245	0/0	c0004	3270	8	8	0	0	0	0	copy fasta	PDGFRA	chr4	54224293	54303245
PDGFRA_chr4_54224293_54303245	0/0	c0005	3270	6	5	0	0	0	1	copy fasta	PDGFRA	chr4	54224293	54303245
PDGFRA_chr4_54224293_54303245	0/0	c0006	3270	5	5	0	0	0	0	copy fasta	PDGFRA	chr4	54224293	54303245
PDGFRA_chr4_54224293_54303245	0/0	c0007	3270	5	5	0	0	0	0	copy fasta	PDGFRA	chr4	54224293	54303245
PDGFRA_chr4_54224293_54303245	0/0	c0008	3270	5	1	2	1	0	1	copy fasta	PDGFRA	chr4	54224293	54303245
PDGFRA_chr4_54224293_54303245	0/0	c0009	3270	4	2	2	0	0	0	copy fasta	PDGFRA	chr4	54224293	54303245
PDGFRA_chr4_54224293_54303245	0/0	c0010	3270	3	2	1	0	0	0	copy fasta	PDGFRA	chr4	54224293	54303245
PDGFRA_chr4_54224293_54303245	0/0	c0011	3270	3	3	0	0	0	0	copy fasta	PDGFRA	chr4	54224293	54303245
PDGFRA_chr4_54224293_54303245	0/0	c0012	3270	2	0	2	0	0	0	copy fasta	PDGFRA	chr4	54224293	54303245
PDGFRA_chr4_54224293_54303245	0/0	c0013	3270	2	2	0	0	0	0	copy fasta	PDGFRA	chr4	54224293	54303245
PDGFRA_chr4_54224293_54303245	0/0	c0014	3270	2	1	1	0	0	0	copy fasta	PDGFRA	chr4	54224293	54303245
PDGFRA_chr4_54224293_54303245	1/0	c0015	3270	2	1	0	0	0	0	copy fasta	PDGFRA	chr4	54224293	54303245
PDGFRA_chr4_54224293_54303245	0/0	c0016	3270	2	0	2	0	0	0	copy fasta	PDGFRA	chr4	54224293	54303245
PDGFRA_chr4_54224293_54303245	0/0	c0017	3270	2	0	0	2	0	0	copy fasta	PDGFRA	chr4	54224293	54303245
PDGFRA_chr4_54224293_54303245	0/0	c0018	3270	1	0	1	0	0	0	copy fasta	PDGFRA	chr4	54224293	54303245
PDGFRA_chr4_54224293_54303245	0/0	c0019	3270	1	1	0	0	0	0	copy fasta	PDGFRA	chr4	54224293	54303245
PDGFRA_chr4_54224293_54303245	0/0	c0020	3270	1	0	0	1	0	0	copy fasta	PDGFRA	chr4	54224293	54303245
PDGFRA_chr4_54224293_54303245	0/0	c0021	3270	1	1	0	0	0	0	copy fasta	PDGFRA	chr4	54224293	54303245
PDGFRA_chr4_54224293_54303245	0/0	c0022	3270	1	1	0	0	0	0	copy fasta	PDGFRA	chr4	54224293	54303245