JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PDGFRA_chr4_54224293_54303245	0/0	c0023	3270	1	0	1	0	0	0	copy fasta	PDGFRA	chr4	54224293	54303245
PDGFRA_chr4_54224293_54303245	0/0	c0024	3270	1	0	1	0	0	0	copy fasta	PDGFRA	chr4	54224293	54303245
PDGFRA_chr4_54224293_54303245	0/0	c0025	3270	1	1	0	0	0	0	copy fasta	PDGFRA	chr4	54224293	54303245
PDGFRA_chr4_54224293_54303245	0/0	c0026	3270	1	0	0	0	0	1	copy fasta	PDGFRA	chr4	54224293	54303245
PDGFRA_chr4_54224293_54303245	0/0	c0027	3270	1	1	0	0	0	0	copy fasta	PDGFRA	chr4	54224293	54303245
PDGFRB_chr5_150108839_150160845	1/0	c0001	3321	272	51	37	149	5	29	copy fasta	PDGFRB	chr5	150108839	150160845
PDGFRB_chr5_150108839_150160845	0/1	c0002	3321	55	3	16	26	4	5	copy fasta	PDGFRB	chr5	150108839	150160845
PDGFRB_chr5_150108839_150160845	0/0	c0003	3321	15	0	4	9	0	2	copy fasta	PDGFRB	chr5	150108839	150160845
PDGFRB_chr5_150108839_150160845	0/0	c0004	3321	11	5	1	0	4	1	copy fasta	PDGFRB	chr5	150108839	150160845
PDGFRB_chr5_150108839_150160845	0/0	c0005	3321	7	0	2	0	3	2	copy fasta	PDGFRB	chr5	150108839	150160845
PDGFRB_chr5_150108839_150160845	0/0	c0006	3321	7	6	1	0	0	0	copy fasta	PDGFRB	chr5	150108839	150160845
PDGFRB_chr5_150108839_150160845	0/0	c0007	3321	6	5	0	0	0	1	copy fasta	PDGFRB	chr5	150108839	150160845
PDGFRB_chr5_150108839_150160845	0/0	c0008	3321	5	0	0	5	0	0	copy fasta	PDGFRB	chr5	150108839	150160845
PDGFRB_chr5_150108839_150160845	0/0	c0009	3321	5	5	0	0	0	0	copy fasta	PDGFRB	chr5	150108839	150160845
PDGFRB_chr5_150108839_150160845	0/0	c0010	3321	4	3	1	0	0	0	copy fasta	PDGFRB	chr5	150108839	150160845
PDGFRB_chr5_150108839_150160845	0/0	c0011	3321	3	2	1	0	0	0	copy fasta	PDGFRB	chr5	150108839	150160845
PDGFRB_chr5_150108839_150160845	0/0	c0012	3321	3	0	0	3	0	0	copy fasta	PDGFRB	chr5	150108839	150160845
PDGFRB_chr5_150108839_150160845	0/0	c0013	3321	2	0	0	2	0	0	copy fasta	PDGFRB	chr5	150108839	150160845
PDGFRB_chr5_150108839_150160845	0/0	c0014	3321	2	0	0	2	0	0	copy fasta	PDGFRB	chr5	150108839	150160845
PDGFRB_chr5_150108839_150160845	0/0	c0015	3321	2	2	0	0	0	0	copy fasta	PDGFRB	chr5	150108839	150160845
PDGFRB_chr5_150108839_150160845	0/0	c0016	3321	2	0	0	2	0	0	copy fasta	PDGFRB	chr5	150108839	150160845
PDGFRB_chr5_150108839_150160845	0/0	c0017	3321	2	2	0	0	0	0	copy fasta	PDGFRB	chr5	150108839	150160845
PDGFRB_chr5_150108839_150160845	0/0	c0018	3321	1	1	0	0	0	0	copy fasta	PDGFRB	chr5	150108839	150160845
PDGFRB_chr5_150108839_150160845	0/0	c0019	3321	1	0	0	1	0	0	copy fasta	PDGFRB	chr5	150108839	150160845
PDGFRB_chr5_150108839_150160845	0/0	c0020	3321	1	0	0	1	0	0	copy fasta	PDGFRB	chr5	150108839	150160845
PDGFRB_chr5_150108839_150160845	0/0	c0021	3321	1	0	1	0	0	0	copy fasta	PDGFRB	chr5	150108839	150160845
PDGFRB_chr5_150108839_150160845	0/0	c0022	3321	1	1	0	0	0	0	copy fasta	PDGFRB	chr5	150108839	150160845
PDGFRB_chr5_150108839_150160845	0/0	c0023	3321	1	0	0	1	0	0	copy fasta	PDGFRB	chr5	150108839	150160845
PDGFRB_chr5_150108839_150160845	0/0	c0024	3321	1	0	0	0	0	1	copy fasta	PDGFRB	chr5	150108839	150160845
PDGFRB_chr5_150108839_150160845	0/0	c0025	3321	1	0	0	1	0	0	copy fasta	PDGFRB	chr5	150108839	150160845
PDGFRB_chr5_150108839_150160845	0/0	c0026	3321	1	0	1	0	0	0	copy fasta	PDGFRB	chr5	150108839	150160845
PDGFRB_chr5_150108839_150160845	0/0	c0027	3321	1	0	0	1	0	0	copy fasta	PDGFRB	chr5	150108839	150160845
PDGFRB_chr5_150108839_150160845	0/0	c0028	3321	1	0	0	0	0	1	copy fasta	PDGFRB	chr5	150108839	150160845
PDGFRB_chr5_150108839_150160845	0/0	c0029	3321	1	0	1	0	0	0	copy fasta	PDGFRB	chr5	150108839	150160845
PDGFRB_chr5_150108839_150160845	0/0	c0030	3321	1	1	0	0	0	0	copy fasta	PDGFRB	chr5	150108839	150160845
PDGFRB_chr5_150108839_150160845	0/0	c0031	3321	1	1	0	0	0	0	copy fasta	PDGFRB	chr5	150108839	150160845
PDGFRB_chr5_150108839_150160845	0/0	c0032	3321	1	0	0	1	0	0	copy fasta	PDGFRB	chr5	150108839	150160845
PDGFRL_chr8_17572216_17648144	0/0	c0001	1128	223	65	41	89	2	26	copy fasta	PDGFRL	chr8	17572216	17648144
PDGFRL_chr8_17572216_17648144	0/1	c0002	1128	147	18	32	72	6	18	copy fasta	PDGFRL	chr8	17572216	17648144
PDGFRL_chr8_17572216_17648144	0/0	c0003	1128	10	9	1	0	0	0	copy fasta	PDGFRL	chr8	17572216	17648144
PDGFRL_chr8_17572216_17648144	1/0	c0004	1128	7	5	1	0	0	0	copy fasta	PDGFRL	chr8	17572216	17648144
PDGFRL_chr8_17572216_17648144	0/0	c0005	1128	2	2	0	0	0	0	copy fasta	PDGFRL	chr8	17572216	17648144
PDGFRL_chr8_17572216_17648144	0/0	c0006	1128	2	0	2	0	0	0	copy fasta	PDGFRL	chr8	17572216	17648144
PDGFRL_chr8_17572216_17648144	0/0	c0007	1128	1	0	0	1	0	0	copy fasta	PDGFRL	chr8	17572216	17648144
PDGFRL_chr8_17572216_17648144	0/0	c0008	1128	1	0	0	1	0	0	copy fasta	PDGFRL	chr8	17572216	17648144
PDGFRL_chr8_17572216_17648144	0/0	c0009	1128	1	0	0	1	0	0	copy fasta	PDGFRL	chr8	17572216	17648144
PDGFRL_chr8_17572216_17648144	0/0	c0010	1128	1	0	0	0	0	1	copy fasta	PDGFRL	chr8	17572216	17648144
PDGFRL_chr8_17572216_17648144	0/0	c0011	1128	1	0	0	1	0	0	copy fasta	PDGFRL	chr8	17572216	17648144
PDGFRL_chr8_17572216_17648144	0/0	c0012	1128	1	0	1	0	0	0	copy fasta	PDGFRL	chr8	17572216	17648144
PDGFRL_chr8_17572216_17648144	0/0	c0013	1128	1	0	0	1	0	0	copy fasta	PDGFRL	chr8	17572216	17648144