JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PDGFRL_chr8_17572216_17648144	0/0	c0014	1128	1	1	0	0	0	0	copy fasta	PDGFRL	chr8	17572216	17648144
PDGFRL_chr8_17572216_17648144	0/0	c0015	1128	1	0	0	0	0	1	copy fasta	PDGFRL	chr8	17572216	17648144
PDHA1_chrX_19338927_19366718	1/1	c0001	1173	133	2	31	69	5	24	copy fasta	PDHA1	chrX	19338927	19366718
PDHA1_chrX_19338927_19366718	0/0	c0002	1173	89	73	10	2	0	4	copy fasta	PDHA1	chrX	19338927	19366718
PDHA1_chrX_19338927_19366718	0/0	c0003	1173	23	0	0	23	0	0	copy fasta	PDHA1	chrX	19338927	19366718
PDHA1_chrX_19338927_19366718	0/0	c0004	1173	1	0	0	1	0	0	copy fasta	PDHA1	chrX	19338927	19366718
PDHA1_chrX_19338927_19366718	0/0	c0005	1173	1	1	0	0	0	0	copy fasta	PDHA1	chrX	19338927	19366718
PDHA2_chr4_95835093_95846464	1/1	c0001	1167	391	76	77	177	16	43	copy fasta	PDHA2	chr4	95835093	95846464
PDHA2_chr4_95835093_95846464	0/0	c0002	1167	9	0	0	8	0	1	copy fasta	PDHA2	chr4	95835093	95846464
PDHA2_chr4_95835093_95846464	0/0	c0003	1167	7	6	1	0	0	0	copy fasta	PDHA2	chr4	95835093	95846464
PDHA2_chr4_95835093_95846464	0/0	c0004	1167	3	3	0	0	0	0	copy fasta	PDHA2	chr4	95835093	95846464
PDHA2_chr4_95835093_95846464	0/0	c0005	1167	3	3	0	0	0	0	copy fasta	PDHA2	chr4	95835093	95846464
PDHA2_chr4_95835093_95846464	0/0	c0006	1167	2	2	0	0	0	0	copy fasta	PDHA2	chr4	95835093	95846464
PDHA2_chr4_95835093_95846464	0/0	c0007	1167	2	1	1	0	0	0	copy fasta	PDHA2	chr4	95835093	95846464
PDHA2_chr4_95835093_95846464	0/0	c0008	1167	2	0	0	2	0	0	copy fasta	PDHA2	chr4	95835093	95846464
PDHA2_chr4_95835093_95846464	0/0	c0009	1167	1	1	0	0	0	0	copy fasta	PDHA2	chr4	95835093	95846464
PDHA2_chr4_95835093_95846464	0/0	c0010	1167	1	0	0	0	0	1	copy fasta	PDHA2	chr4	95835093	95846464
PDHA2_chr4_95835093_95846464	0/0	c0011	1167	1	0	0	1	0	0	copy fasta	PDHA2	chr4	95835093	95846464
PDHA2_chr4_95835093_95846464	0/0	c0012	1167	1	0	0	0	0	1	copy fasta	PDHA2	chr4	95835093	95846464
PDHA2_chr4_95835093_95846464	0/0	c0013	1167	1	0	1	0	0	0	copy fasta	PDHA2	chr4	95835093	95846464
PDHB_chr3_58422630_58438832	0/0	c0001	1080	293	67	55	125	11	35	copy fasta	PDHB	chr3	58422630	58438832
PDHB_chr3_58422630_58438832	0/1	c0002	1080	58	27	20	0	1	9	copy fasta	PDHB	chr3	58422630	58438832
PDHB_chr3_58422630_58438832	1/0	c0003	1080	5	4	0	0	0	0	copy fasta	PDHB	chr3	58422630	58438832
PDHB_chr3_58422630_58438832	0/0	c0004	1080	2	0	2	0	0	0	copy fasta	PDHB	chr3	58422630	58438832
PDHB_chr3_58422630_58438832	0/0	c0005	1080	1	0	1	0	0	0	copy fasta	PDHB	chr3	58422630	58438832
PDHB_chr3_58422630_58438832	0/0	c0006	1080	1	0	0	1	0	0	copy fasta	PDHB	chr3	58422630	58438832
PDHX_chr11_34911618_35001128	0/0	c0001	1506	120	18	27	58	4	13	copy fasta	PDHX	chr11	34911618	35001128
PDHX_chr11_34911618_35001128	1/0	c0002	1506	78	20	17	32	0	8	copy fasta	PDHX	chr11	34911618	35001128
PDHX_chr11_34911618_35001128	0/0	c0003	1506	29	4	6	17	1	1	copy fasta	PDHX	chr11	34911618	35001128
PDHX_chr11_34911618_35001128	0/0	c0004	1506	14	13	1	0	0	0	copy fasta	PDHX	chr11	34911618	35001128
PDHX_chr11_34911618_35001128	0/0	c0005	1506	13	13	0	0	0	0	copy fasta	PDHX	chr11	34911618	35001128
PDHX_chr11_34911618_35001128	0/0	c0006	1506	12	1	4	0	2	5	copy fasta	PDHX	chr11	34911618	35001128
PDHX_chr11_34911618_35001128	0/0	c0007	1506	8	0	0	2	0	6	copy fasta	PDHX	chr11	34911618	35001128
PDHX_chr11_34911618_35001128	0/0	c0008	1506	8	8	0	0	0	0	copy fasta	PDHX	chr11	34911618	35001128
PDHX_chr11_34911618_35001128	0/0	c0009	1506	3	3	0	0	0	0	copy fasta	PDHX	chr11	34911618	35001128
PDHX_chr11_34911618_35001128	0/0	c0010	1506	3	0	0	0	3	0	copy fasta	PDHX	chr11	34911618	35001128
PDHX_chr11_34911618_35001128	0/0	c0011	1506	3	3	0	0	0	0	copy fasta	PDHX	chr11	34911618	35001128
PDHX_chr11_34911618_35001128	0/0	c0012	1506	3	3	0	0	0	0	copy fasta	PDHX	chr11	34911618	35001128
PDHX_chr11_34911618_35001128	0/0	c0013	1506	2	0	0	1	0	1	copy fasta	PDHX	chr11	34911618	35001128
PDHX_chr11_34911618_35001128	0/0	c0014	1506	2	0	2	0	0	0	copy fasta	PDHX	chr11	34911618	35001128
PDHX_chr11_34911618_35001128	0/1	c0015	1506	2	0	1	0	0	0	copy fasta	PDHX	chr11	34911618	35001128
PDHX_chr11_34911618_35001128	0/0	c0016	1506	2	0	0	2	0	0	copy fasta	PDHX	chr11	34911618	35001128
PDHX_chr11_34911618_35001128	0/0	c0017	1506	1	1	0	0	0	0	copy fasta	PDHX	chr11	34911618	35001128
PDHX_chr11_34911618_35001128	0/0	c0018	1506	1	0	1	0	0	0	copy fasta	PDHX	chr11	34911618	35001128
PDHX_chr11_34911618_35001128	0/0	c0019	1506	1	0	0	0	0	1	copy fasta	PDHX	chr11	34911618	35001128
PDHX_chr11_34911618_35001128	0/0	c0020	1506	1	0	0	1	0	0	copy fasta	PDHX	chr11	34911618	35001128
PDHX_chr11_34911618_35001128	0/0	c0021	1521	1	0	0	1	0	0	copy fasta	PDHX	chr11	34911618	35001128
PDHX_chr11_34911618_35001128	0/0	c0022	1506	1	0	1	0	0	0	copy fasta	PDHX	chr11	34911618	35001128
PDHX_chr11_34911618_35001128	0/0	c0023	1506	1	1	0	0	0	0	copy fasta	PDHX	chr11	34911618	35001128
PDHX_chr11_34911618_35001128	0/0	c0024	1506	1	0	0	0	0	1	copy fasta	PDHX	chr11	34911618	35001128