JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ARHGEF15_chr17_8305241_8327511	0/0	c0013	2526	2	0	2	0	0	0	copy fasta	ARHGEF15	chr17	8305241	8327511
ARHGEF15_chr17_8305241_8327511	0/0	c0014	2526	2	1	0	0	1	0	copy fasta	ARHGEF15	chr17	8305241	8327511
ARHGEF15_chr17_8305241_8327511	0/0	c0015	2526	2	0	2	0	0	0	copy fasta	ARHGEF15	chr17	8305241	8327511
ARHGEF15_chr17_8305241_8327511	0/0	c0016	2526	1	1	0	0	0	0	copy fasta	ARHGEF15	chr17	8305241	8327511
ARHGEF15_chr17_8305241_8327511	0/0	c0017	2526	1	1	0	0	0	0	copy fasta	ARHGEF15	chr17	8305241	8327511
ARHGEF15_chr17_8305241_8327511	0/0	c0018	2526	1	1	0	0	0	0	copy fasta	ARHGEF15	chr17	8305241	8327511
ARHGEF15_chr17_8305241_8327511	0/0	c0019	2526	1	1	0	0	0	0	copy fasta	ARHGEF15	chr17	8305241	8327511
ARHGEF15_chr17_8305241_8327511	0/0	c0020	2526	1	1	0	0	0	0	copy fasta	ARHGEF15	chr17	8305241	8327511
ARHGEF15_chr17_8305241_8327511	0/0	c0021	2526	1	1	0	0	0	0	copy fasta	ARHGEF15	chr17	8305241	8327511
ARHGEF15_chr17_8305241_8327511	0/0	c0022	2526	1	0	0	1	0	0	copy fasta	ARHGEF15	chr17	8305241	8327511
ARHGEF15_chr17_8305241_8327511	0/0	c0023	2526	1	0	0	1	0	0	copy fasta	ARHGEF15	chr17	8305241	8327511
ARHGEF15_chr17_8305241_8327511	0/0	c0024	2526	1	1	0	0	0	0	copy fasta	ARHGEF15	chr17	8305241	8327511
ARHGEF15_chr17_8305241_8327511	0/0	c0025	2526	1	0	1	0	0	0	copy fasta	ARHGEF15	chr17	8305241	8327511
ARHGEF15_chr17_8305241_8327511	0/0	c0026	2526	1	1	0	0	0	0	copy fasta	ARHGEF15	chr17	8305241	8327511
ARHGEF15_chr17_8305241_8327511	0/0	c0027	2526	1	0	0	1	0	0	copy fasta	ARHGEF15	chr17	8305241	8327511
ARHGEF15_chr17_8305241_8327511	0/0	c0028	2526	1	0	1	0	0	0	copy fasta	ARHGEF15	chr17	8305241	8327511
ARHGEF16_chr1_3449665_3486113	0/1	c0001	2130	189	25	47	69	15	32	copy fasta	ARHGEF16	chr1	3449665	3486113
ARHGEF16_chr1_3449665_3486113	0/0	c0002	2130	27	0	10	16	0	1	copy fasta	ARHGEF16	chr1	3449665	3486113
ARHGEF16_chr1_3449665_3486113	0/0	c0003	2130	18	16	2	0	0	0	copy fasta	ARHGEF16	chr1	3449665	3486113
ARHGEF16_chr1_3449665_3486113	0/0	c0004	2130	16	0	2	14	0	0	copy fasta	ARHGEF16	chr1	3449665	3486113
ARHGEF16_chr1_3449665_3486113	0/0	c0005	2130	9	0	1	8	0	0	copy fasta	ARHGEF16	chr1	3449665	3486113
ARHGEF16_chr1_3449665_3486113	0/0	c0006	2130	8	8	0	0	0	0	copy fasta	ARHGEF16	chr1	3449665	3486113
ARHGEF16_chr1_3449665_3486113	0/0	c0007	2130	8	0	1	6	0	1	copy fasta	ARHGEF16	chr1	3449665	3486113
ARHGEF16_chr1_3449665_3486113	1/0	c0008	2130	5	4	0	0	0	0	copy fasta	ARHGEF16	chr1	3449665	3486113
ARHGEF16_chr1_3449665_3486113	0/0	c0009	2130	4	0	0	4	0	0	copy fasta	ARHGEF16	chr1	3449665	3486113
ARHGEF16_chr1_3449665_3486113	0/0	c0010	2130	4	1	2	0	1	0	copy fasta	ARHGEF16	chr1	3449665	3486113
ARHGEF16_chr1_3449665_3486113	0/0	c0011	2130	4	4	0	0	0	0	copy fasta	ARHGEF16	chr1	3449665	3486113
ARHGEF16_chr1_3449665_3486113	0/0	c0012	2130	4	3	1	0	0	0	copy fasta	ARHGEF16	chr1	3449665	3486113
ARHGEF16_chr1_3449665_3486113	0/0	c0013	2130	4	4	0	0	0	0	copy fasta	ARHGEF16	chr1	3449665	3486113
ARHGEF16_chr1_3449665_3486113	0/0	c0014	2130	3	3	0	0	0	0	copy fasta	ARHGEF16	chr1	3449665	3486113
ARHGEF16_chr1_3449665_3486113	0/0	c0015	2130	2	0	0	2	0	0	copy fasta	ARHGEF16	chr1	3449665	3486113
ARHGEF16_chr1_3449665_3486113	0/0	c0016	2130	2	2	0	0	0	0	copy fasta	ARHGEF16	chr1	3449665	3486113
ARHGEF16_chr1_3449665_3486113	0/0	c0017	2130	2	1	1	0	0	0	copy fasta	ARHGEF16	chr1	3449665	3486113
ARHGEF16_chr1_3449665_3486113	0/0	c0018	2130	2	0	0	0	0	2	copy fasta	ARHGEF16	chr1	3449665	3486113
ARHGEF16_chr1_3449665_3486113	0/0	c0019	2130	2	0	0	2	0	0	copy fasta	ARHGEF16	chr1	3449665	3486113
ARHGEF16_chr1_3449665_3486113	0/0	c0020	2130	2	1	1	0	0	0	copy fasta	ARHGEF16	chr1	3449665	3486113
ARHGEF16_chr1_3449665_3486113	0/0	c0021	2130	2	0	0	0	0	2	copy fasta	ARHGEF16	chr1	3449665	3486113
ARHGEF16_chr1_3449665_3486113	0/0	c0022	2130	2	2	0	0	0	0	copy fasta	ARHGEF16	chr1	3449665	3486113
ARHGEF16_chr1_3449665_3486113	0/0	c0023	2130	2	0	0	2	0	0	copy fasta	ARHGEF16	chr1	3449665	3486113
ARHGEF16_chr1_3449665_3486113	0/0	c0024	2130	1	1	0	0	0	0	copy fasta	ARHGEF16	chr1	3449665	3486113
ARHGEF16_chr1_3449665_3486113	0/0	c0025	2130	1	1	0	0	0	0	copy fasta	ARHGEF16	chr1	3449665	3486113
ARHGEF16_chr1_3449665_3486113	0/0	c0026	2130	1	0	1	0	0	0	copy fasta	ARHGEF16	chr1	3449665	3486113
ARHGEF16_chr1_3449665_3486113	0/0	c0027	2130	1	0	0	1	0	0	copy fasta	ARHGEF16	chr1	3449665	3486113
ARHGEF16_chr1_3449665_3486113	0/0	c0028	2130	1	1	0	0	0	0	copy fasta	ARHGEF16	chr1	3449665	3486113
ARHGEF16_chr1_3449665_3486113	0/0	c0029	2130	1	1	0	0	0	0	copy fasta	ARHGEF16	chr1	3449665	3486113
ARHGEF16_chr1_3449665_3486113	0/0	c0030	2130	1	1	0	0	0	0	copy fasta	ARHGEF16	chr1	3449665	3486113
ARHGEF16_chr1_3449665_3486113	0/0	c0031	2130	1	1	0	0	0	0	copy fasta	ARHGEF16	chr1	3449665	3486113
ARHGEF16_chr1_3449665_3486113	0/0	c0032	2130	1	0	1	0	0	0	copy fasta	ARHGEF16	chr1	3449665	3486113
ARHGEF16_chr1_3449665_3486113	0/0	c0033	2130	1	0	0	1	0	0	copy fasta	ARHGEF16	chr1	3449665	3486113
ARHGEF16_chr1_3449665_3486113	0/0	c0034	2130	1	1	0	0	0	0	copy fasta	ARHGEF16	chr1	3449665	3486113