JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PDHX_chr11_34911618_35001128	0/0	c0025	1506	1	1	0	0	0	0	copy fasta	PDHX	chr11	34911618	35001128
PDHX_chr11_34911618_35001128	0/0	c0026	1506	1	1	0	0	0	0	copy fasta	PDHX	chr11	34911618	35001128
PDHX_chr11_34911618_35001128	0/0	c0027	1506	1	1	0	0	0	0	copy fasta	PDHX	chr11	34911618	35001128
PDHX_chr11_34911618_35001128	0/0	c0028	1506	1	1	0	0	0	0	copy fasta	PDHX	chr11	34911618	35001128
PDIA2_chr16_278164_292215	0/0	c0001	1578	233	18	43	134	7	31	copy fasta	PDIA2	chr16	278164	292215
PDIA2_chr16_278164_292215	0/0	c0002	1578	29	0	6	15	3	5	copy fasta	PDIA2	chr16	278164	292215
PDIA2_chr16_278164_292215	0/0	c0003	1578	19	6	2	11	0	0	copy fasta	PDIA2	chr16	278164	292215
PDIA2_chr16_278164_292215	0/0	c0004	1578	15	12	3	0	0	0	copy fasta	PDIA2	chr16	278164	292215
PDIA2_chr16_278164_292215	1/0	c0005	1578	13	6	0	5	0	1	copy fasta	PDIA2	chr16	278164	292215
PDIA2_chr16_278164_292215	0/1	c0006	1578	10	0	5	0	1	3	copy fasta	PDIA2	chr16	278164	292215
PDIA2_chr16_278164_292215	0/0	c0007	1578	9	1	6	0	1	1	copy fasta	PDIA2	chr16	278164	292215
PDIA2_chr16_278164_292215	0/0	c0008	1578	7	7	0	0	0	0	copy fasta	PDIA2	chr16	278164	292215
PDIA2_chr16_278164_292215	0/0	c0009	1578	7	0	2	4	1	0	copy fasta	PDIA2	chr16	278164	292215
PDIA2_chr16_278164_292215	0/0	c0010	1578	7	7	0	0	0	0	copy fasta	PDIA2	chr16	278164	292215
PDIA2_chr16_278164_292215	0/0	c0011	1578	6	0	1	2	0	3	copy fasta	PDIA2	chr16	278164	292215
PDIA2_chr16_278164_292215	0/0	c0012	1578	5	5	0	0	0	0	copy fasta	PDIA2	chr16	278164	292215
PDIA2_chr16_278164_292215	0/0	c0013	1578	5	4	1	0	0	0	copy fasta	PDIA2	chr16	278164	292215
PDIA2_chr16_278164_292215	0/0	c0014	1578	5	4	1	0	0	0	copy fasta	PDIA2	chr16	278164	292215
PDIA2_chr16_278164_292215	0/0	c0015	1578	5	1	2	0	2	0	copy fasta	PDIA2	chr16	278164	292215
PDIA2_chr16_278164_292215	0/0	c0016	1578	4	4	0	0	0	0	copy fasta	PDIA2	chr16	278164	292215
PDIA2_chr16_278164_292215	0/0	c0017	1578	4	1	2	0	0	1	copy fasta	PDIA2	chr16	278164	292215
PDIA2_chr16_278164_292215	0/0	c0018	1578	4	0	3	1	0	0	copy fasta	PDIA2	chr16	278164	292215
PDIA2_chr16_278164_292215	0/0	c0019	1578	3	2	1	0	0	0	copy fasta	PDIA2	chr16	278164	292215
PDIA2_chr16_278164_292215	0/0	c0020	1578	2	0	2	0	0	0	copy fasta	PDIA2	chr16	278164	292215
PDIA2_chr16_278164_292215	0/0	c0021	1578	2	2	0	0	0	0	copy fasta	PDIA2	chr16	278164	292215
PDIA2_chr16_278164_292215	0/0	c0022	1578	2	0	0	0	0	2	copy fasta	PDIA2	chr16	278164	292215
PDIA2_chr16_278164_292215	0/0	c0023	1578	2	1	0	1	0	0	copy fasta	PDIA2	chr16	278164	292215
PDIA2_chr16_278164_292215	0/0	c0024	1578	2	2	0	0	0	0	copy fasta	PDIA2	chr16	278164	292215
PDIA2_chr16_278164_292215	0/0	c0025	1578	2	0	2	0	0	0	copy fasta	PDIA2	chr16	278164	292215
PDIA2_chr16_278164_292215	0/0	c0026	1578	1	1	0	0	0	0	copy fasta	PDIA2	chr16	278164	292215
PDIA2_chr16_278164_292215	0/0	c0027	1578	1	1	0	0	0	0	copy fasta	PDIA2	chr16	278164	292215
PDIA2_chr16_278164_292215	0/0	c0028	1578	1	1	0	0	0	0	copy fasta	PDIA2	chr16	278164	292215
PDIA2_chr16_278164_292215	0/0	c0029	1578	1	1	0	0	0	0	copy fasta	PDIA2	chr16	278164	292215
PDIA2_chr16_278164_292215	0/0	c0030	1578	1	1	0	0	0	0	copy fasta	PDIA2	chr16	278164	292215
PDIA2_chr16_278164_292215	0/0	c0031	1578	1	0	0	0	1	0	copy fasta	PDIA2	chr16	278164	292215
PDIA2_chr16_278164_292215	0/0	c0032	1578	1	0	0	0	1	0	copy fasta	PDIA2	chr16	278164	292215
PDIA2_chr16_278164_292215	0/0	c0033	1578	1	1	0	0	0	0	copy fasta	PDIA2	chr16	278164	292215
PDIA2_chr16_278164_292215	0/0	c0034	1578	1	1	0	0	0	0	copy fasta	PDIA2	chr16	278164	292215
PDIA2_chr16_278164_292215	0/0	c0035	1578	1	1	0	0	0	0	copy fasta	PDIA2	chr16	278164	292215
PDIA2_chr16_278164_292215	0/0	c0036	1578	1	0	1	0	0	0	copy fasta	PDIA2	chr16	278164	292215
PDIA2_chr16_278164_292215	0/0	c0037	1578	1	0	0	0	0	1	copy fasta	PDIA2	chr16	278164	292215
PDIA2_chr16_278164_292215	0/0	c0038	1578	1	1	0	0	0	0	copy fasta	PDIA2	chr16	278164	292215
PDIA2_chr16_278164_292215	0/0	c0039	1578	1	0	0	1	0	0	copy fasta	PDIA2	chr16	278164	292215
PDIA2_chr16_278164_292215	0/0	c0040	1578	1	0	0	0	0	1	copy fasta	PDIA2	chr16	278164	292215
PDIA2_chr16_278164_292215	0/0	c0041	1578	1	0	0	1	0	0	copy fasta	PDIA2	chr16	278164	292215
PDIA2_chr16_278164_292215	0/0	c0042	1578	1	0	0	1	0	0	copy fasta	PDIA2	chr16	278164	292215
PDIA2_chr16_278164_292215	0/0	c0043	1578	1	1	0	0	0	0	copy fasta	PDIA2	chr16	278164	292215
PDIA2_chr16_278164_292215	0/0	c0044	1578	1	0	0	1	0	0	copy fasta	PDIA2	chr16	278164	292215
PDIA2_chr16_278164_292215	0/0	c0045	1578	1	0	0	1	0	0	copy fasta	PDIA2	chr16	278164	292215
PDIA2_chr16_278164_292215	0/0	c0046	1578	1	0	0	1	0	0	copy fasta	PDIA2	chr16	278164	292215