JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PDIA2_chr16_278164_292215	0/0	c0047	1578	1	0	0	1	0	0	copy fasta	PDIA2	chr16	278164	292215
PDIA2_chr16_278164_292215	0/0	c0048	1578	1	0	0	1	0	0	copy fasta	PDIA2	chr16	278164	292215
PDIA2_chr16_278164_292215	0/0	c0049	1578	1	0	0	1	0	0	copy fasta	PDIA2	chr16	278164	292215
PDIA2_chr16_278164_292215	0/0	c0050	1578	1	0	1	0	0	0	copy fasta	PDIA2	chr16	278164	292215
PDIA2_chr16_278164_292215	0/0	c0051	1578	1	0	0	1	0	0	copy fasta	PDIA2	chr16	278164	292215
PDIA2_chr16_278164_292215	0/0	c0052	1578	1	0	0	0	0	1	copy fasta	PDIA2	chr16	278164	292215
PDIA2_chr16_278164_292215	0/0	c0053	1578	1	0	0	0	1	0	copy fasta	PDIA2	chr16	278164	292215
PDIA2_chr16_278164_292215	0/0	c0054	1578	1	1	0	0	0	0	copy fasta	PDIA2	chr16	278164	292215
PDIA2_chr16_278164_292215	0/0	c0055	1578	1	1	0	0	0	0	copy fasta	PDIA2	chr16	278164	292215
PDIA2_chr16_278164_292215	0/0	c0056	1578	1	1	0	0	0	0	copy fasta	PDIA2	chr16	278164	292215
PDIA2_chr16_278164_292215	0/0	c0057	1578	1	0	0	1	0	0	copy fasta	PDIA2	chr16	278164	292215
PDIA2_chr16_278164_292215	0/0	c0058	1578	1	1	0	0	0	0	copy fasta	PDIA2	chr16	278164	292215
PDIA2_chr16_278164_292215	0/0	c0059	1578	1	1	0	0	0	0	copy fasta	PDIA2	chr16	278164	292215
PDIA3_chr15_43741438_43778278	1/0	c0001	1518	163	74	17	52	5	14	copy fasta	PDIA3	chr15	43741438	43778278
PDIA3_chr15_43741438_43778278	0/1	c0002	1518	158	12	25	93	7	20	copy fasta	PDIA3	chr15	43741438	43778278
PDIA3_chr15_43741438_43778278	0/0	c0003	1518	16	0	1	15	0	0	copy fasta	PDIA3	chr15	43741438	43778278
PDIA3_chr15_43741438_43778278	0/0	c0004	1518	14	5	1	8	0	0	copy fasta	PDIA3	chr15	43741438	43778278
PDIA3_chr15_43741438_43778278	0/0	c0005	1518	2	0	0	0	0	2	copy fasta	PDIA3	chr15	43741438	43778278
PDIA3_chr15_43741438_43778278	0/0	c0006	1518	1	1	0	0	0	0	copy fasta	PDIA3	chr15	43741438	43778278
PDIA3_chr15_43741438_43778278	0/0	c0007	1518	1	0	0	1	0	0	copy fasta	PDIA3	chr15	43741438	43778278
PDIA3_chr15_43741438_43778278	0/0	c0008	1518	1	0	0	1	0	0	copy fasta	PDIA3	chr15	43741438	43778278
PDIA3_chr15_43741438_43778278	0/0	c0009	1518	1	0	1	0	0	0	copy fasta	PDIA3	chr15	43741438	43778278
PDIA3_chr15_43741438_43778278	0/0	c0010	1518	1	0	1	0	0	0	copy fasta	PDIA3	chr15	43741438	43778278
PDIA4_chr7_148998062_149033505	1/1	c0001	1938	285	61	53	129	11	29	copy fasta	PDIA4	chr7	148998062	149033505
PDIA4_chr7_148998062_149033505	0/0	c0002	1938	28	22	4	0	0	2	copy fasta	PDIA4	chr7	148998062	149033505
PDIA4_chr7_148998062_149033505	0/0	c0003	1938	12	2	0	10	0	0	copy fasta	PDIA4	chr7	148998062	149033505
PDIA4_chr7_148998062_149033505	0/0	c0004	1938	4	0	0	4	0	0	copy fasta	PDIA4	chr7	148998062	149033505
PDIA4_chr7_148998062_149033505	0/0	c0005	1938	3	3	0	0	0	0	copy fasta	PDIA4	chr7	148998062	149033505
PDIA4_chr7_148998062_149033505	0/0	c0006	1938	3	3	0	0	0	0	copy fasta	PDIA4	chr7	148998062	149033505
PDIA4_chr7_148998062_149033505	0/0	c0007	1938	2	0	2	0	0	0	copy fasta	PDIA4	chr7	148998062	149033505
PDIA4_chr7_148998062_149033505	0/0	c0008	1938	2	0	0	0	0	2	copy fasta	PDIA4	chr7	148998062	149033505
PDIA4_chr7_148998062_149033505	0/0	c0009	1938	1	1	0	0	0	0	copy fasta	PDIA4	chr7	148998062	149033505
PDIA4_chr7_148998062_149033505	0/0	c0010	1938	1	0	0	1	0	0	copy fasta	PDIA4	chr7	148998062	149033505
PDIA4_chr7_148998062_149033505	0/0	c0011	1938	1	1	0	0	0	0	copy fasta	PDIA4	chr7	148998062	149033505
PDIA4_chr7_148998062_149033505	0/0	c0012	1938	1	0	1	0	0	0	copy fasta	PDIA4	chr7	148998062	149033505
PDIA4_chr7_148998062_149033505	0/0	c0013	1938	1	0	0	0	0	1	copy fasta	PDIA4	chr7	148998062	149033505
PDIA4_chr7_148998062_149033505	0/0	c0014	1938	1	0	1	0	0	0	copy fasta	PDIA4	chr7	148998062	149033505
PDIA4_chr7_148998062_149033505	0/0	c0015	1938	1	1	0	0	0	0	copy fasta	PDIA4	chr7	148998062	149033505
PDIA4_chr7_148998062_149033505	0/0	c0016	1938	1	0	1	0	0	0	copy fasta	PDIA4	chr7	148998062	149033505
PDIA4_chr7_148998062_149033505	0/0	c0017	1938	1	1	0	0	0	0	copy fasta	PDIA4	chr7	148998062	149033505
PDIA4_chr7_148998062_149033505	0/0	c0018	1938	1	0	0	0	1	0	copy fasta	PDIA4	chr7	148998062	149033505
PDIA4_chr7_148998062_149033505	0/0	c0019	1938	1	1	0	0	0	0	copy fasta	PDIA4	chr7	148998062	149033505
PDIA4_chr7_148998062_149033505	0/0	c0020	1938	1	1	0	0	0	0	copy fasta	PDIA4	chr7	148998062	149033505
PDIA4_chr7_148998062_149033505	0/0	c0021	1938	1	1	0	0	0	0	copy fasta	PDIA4	chr7	148998062	149033505
PDIA5_chr3_123062025_123167104	0/1	c0001	1560	147	46	27	44	6	23	copy fasta	PDIA5	chr3	123062025	123167104
PDIA5_chr3_123062025_123167104	0/0	c0002	1560	73	5	15	43	3	7	copy fasta	PDIA5	chr3	123062025	123167104
PDIA5_chr3_123062025_123167104	1/0	c0003	1560	50	16	18	4	3	8	copy fasta	PDIA5	chr3	123062025	123167104
PDIA5_chr3_123062025_123167104	0/0	c0004	1560	22	1	5	13	1	2	copy fasta	PDIA5	chr3	123062025	123167104
PDIA5_chr3_123062025_123167104	0/0	c0005	1560	11	1	1	8	0	1	copy fasta	PDIA5	chr3	123062025	123167104
PDIA5_chr3_123062025_123167104	0/0	c0006	1560	6	0	0	5	1	0	copy fasta	PDIA5	chr3	123062025	123167104