JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PDIA5_chr3_123062025_123167104	0/0	c0007	1560	4	3	1	0	0	0	copy fasta	PDIA5	chr3	123062025	123167104
PDIA5_chr3_123062025_123167104	0/0	c0008	1560	3	3	0	0	0	0	copy fasta	PDIA5	chr3	123062025	123167104
PDIA5_chr3_123062025_123167104	0/0	c0009	1560	2	0	0	2	0	0	copy fasta	PDIA5	chr3	123062025	123167104
PDIA5_chr3_123062025_123167104	0/0	c0010	1560	2	0	0	2	0	0	copy fasta	PDIA5	chr3	123062025	123167104
PDIA5_chr3_123062025_123167104	0/0	c0011	1560	2	2	0	0	0	0	copy fasta	PDIA5	chr3	123062025	123167104
PDIA5_chr3_123062025_123167104	0/0	c0012	1560	2	2	0	0	0	0	copy fasta	PDIA5	chr3	123062025	123167104
PDIA5_chr3_123062025_123167104	0/0	c0013	1560	1	0	0	1	0	0	copy fasta	PDIA5	chr3	123062025	123167104
PDIA5_chr3_123062025_123167104	0/0	c0014	1560	1	1	0	0	0	0	copy fasta	PDIA5	chr3	123062025	123167104
PDIA5_chr3_123062025_123167104	0/0	c0015	1560	1	0	1	0	0	0	copy fasta	PDIA5	chr3	123062025	123167104
PDIA5_chr3_123062025_123167104	0/0	c0016	1560	1	1	0	0	0	0	copy fasta	PDIA5	chr3	123062025	123167104
PDIA5_chr3_123062025_123167104	0/0	c0017	1560	1	0	0	0	0	1	copy fasta	PDIA5	chr3	123062025	123167104
PDIA5_chr3_123062025_123167104	0/0	c0018	1560	1	1	0	0	0	0	copy fasta	PDIA5	chr3	123062025	123167104
PDIA5_chr3_123062025_123167104	0/0	c0019	1560	1	0	0	1	0	0	copy fasta	PDIA5	chr3	123062025	123167104
PDIA5_chr3_123062025_123167104	0/0	c0020	1560	1	0	0	1	0	0	copy fasta	PDIA5	chr3	123062025	123167104
PDIA6_chr2_10778391_10817785	1/1	c0001	1323	167	51	31	69	5	9	copy fasta	PDIA6	chr2	10778391	10817785
PDIA6_chr2_10778391_10817785	0/0	c0002	1323	79	7	17	41	2	12	copy fasta	PDIA6	chr2	10778391	10817785
PDIA6_chr2_10778391_10817785	0/0	c0003	1323	34	3	13	11	3	4	copy fasta	PDIA6	chr2	10778391	10817785
PDIA6_chr2_10778391_10817785	0/0	c0004	1323	31	28	3	0	0	0	copy fasta	PDIA6	chr2	10778391	10817785
PDIA6_chr2_10778391_10817785	0/0	c0005	1323	21	2	4	1	2	12	copy fasta	PDIA6	chr2	10778391	10817785
PDIA6_chr2_10778391_10817785	0/0	c0006	1323	2	0	2	0	0	0	copy fasta	PDIA6	chr2	10778391	10817785
PDIA6_chr2_10778391_10817785	0/0	c0007	1323	2	1	1	0	0	0	copy fasta	PDIA6	chr2	10778391	10817785
PDIA6_chr2_10778391_10817785	0/0	c0008	1323	1	0	0	0	0	1	copy fasta	PDIA6	chr2	10778391	10817785
PDIA6_chr2_10778391_10817785	0/0	c0009	1323	1	0	0	1	0	0	copy fasta	PDIA6	chr2	10778391	10817785
PDIA6_chr2_10778391_10817785	0/0	c0010	1323	1	1	0	0	0	0	copy fasta	PDIA6	chr2	10778391	10817785
PDIA6_chr2_10778391_10817785	0/0	c0011	1323	1	0	0	1	0	0	copy fasta	PDIA6	chr2	10778391	10817785
PDIA6_chr2_10778391_10817785	0/0	c0012	1323	1	1	0	0	0	0	copy fasta	PDIA6	chr2	10778391	10817785
PDIA6_chr2_10778391_10817785	0/0	c0013	1323	1	0	1	0	0	0	copy fasta	PDIA6	chr2	10778391	10817785
PDIK1L_chr1_26106824_26130555	1/1	c0001	1026	313	77	53	134	14	33	copy fasta	PDIK1L	chr1	26106824	26130555
PDIK1L_chr1_26106824_26130555	0/0	c0002	1026	36	19	11	1	2	3	copy fasta	PDIK1L	chr1	26106824	26130555
PDIK1L_chr1_26106824_26130555	0/0	c0003	1026	1	0	0	1	0	0	copy fasta	PDIK1L	chr1	26106824	26130555
PDILT_chr16_20354175_20409737	1/1	c0001	1755	146	17	23	95	0	9	copy fasta	PDILT	chr16	20354175	20409737
PDILT_chr16_20354175_20409737	0/0	c0002	1755	64	18	18	11	7	10	copy fasta	PDILT	chr16	20354175	20409737
PDILT_chr16_20354175_20409737	0/0	c0003	1755	62	14	32	3	4	9	copy fasta	PDILT	chr16	20354175	20409737
PDILT_chr16_20354175_20409737	0/0	c0004	1755	24	11	3	8	1	1	copy fasta	PDILT	chr16	20354175	20409737
PDILT_chr16_20354175_20409737	0/0	c0005	1755	20	0	0	16	0	4	copy fasta	PDILT	chr16	20354175	20409737
PDILT_chr16_20354175_20409737	0/0	c0006	1755	16	9	3	3	0	1	copy fasta	PDILT	chr16	20354175	20409737
PDILT_chr16_20354175_20409737	0/0	c0007	1755	15	5	3	3	2	2	copy fasta	PDILT	chr16	20354175	20409737
PDILT_chr16_20354175_20409737	0/0	c0008	1755	13	0	0	9	0	4	copy fasta	PDILT	chr16	20354175	20409737
PDILT_chr16_20354175_20409737	0/0	c0009	1755	13	0	0	12	1	0	copy fasta	PDILT	chr16	20354175	20409737
PDILT_chr16_20354175_20409737	0/0	c0010	1755	4	4	0	0	0	0	copy fasta	PDILT	chr16	20354175	20409737
PDILT_chr16_20354175_20409737	0/0	c0011	1755	3	0	0	3	0	0	copy fasta	PDILT	chr16	20354175	20409737
PDILT_chr16_20354175_20409737	0/0	c0012	1755	2	2	0	0	0	0	copy fasta	PDILT	chr16	20354175	20409737
PDILT_chr16_20354175_20409737	0/0	c0013	1755	2	2	0	0	0	0	copy fasta	PDILT	chr16	20354175	20409737
PDILT_chr16_20354175_20409737	0/0	c0014	1755	2	2	0	0	0	0	copy fasta	PDILT	chr16	20354175	20409737
PDILT_chr16_20354175_20409737	0/0	c0015	1755	2	2	0	0	0	0	copy fasta	PDILT	chr16	20354175	20409737
PDILT_chr16_20354175_20409737	0/0	c0016	1755	2	2	0	0	0	0	copy fasta	PDILT	chr16	20354175	20409737
PDILT_chr16_20354175_20409737	0/0	c0017	1755	1	1	0	0	0	0	copy fasta	PDILT	chr16	20354175	20409737
PDILT_chr16_20354175_20409737	0/0	c0018	1755	1	1	0	0	0	0	copy fasta	PDILT	chr16	20354175	20409737
PDILT_chr16_20354175_20409737	0/0	c0019	1755	1	0	0	0	1	0	copy fasta	PDILT	chr16	20354175	20409737
PDILT_chr16_20354175_20409737	0/0	c0020	1755	1	1	0	0	0	0	copy fasta	PDILT	chr16	20354175	20409737