JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PDLIM2_chr8_22575475_22599298	1/1	c0002	1059	131	29	17	67	5	11	copy fasta	PDLIM2	chr8	22575475	22599298
PDLIM2_chr8_22575475_22599298	0/0	c0003	1060	22	4	9	9	0	0	copy fasta	PDLIM2	chr8	22575475	22599298
PDLIM2_chr8_22575475_22599298	0/0	c0004	1060	14	5	5	2	0	2	copy fasta	PDLIM2	chr8	22575475	22599298
PDLIM2_chr8_22575475_22599298	0/0	c0005	1059	6	0	0	6	0	0	copy fasta	PDLIM2	chr8	22575475	22599298
PDLIM2_chr8_22575475_22599298	0/0	c0006	1060	4	0	1	3	0	0	copy fasta	PDLIM2	chr8	22575475	22599298
PDLIM2_chr8_22575475_22599298	0/0	c0007	1059	4	0	0	4	0	0	copy fasta	PDLIM2	chr8	22575475	22599298
PDLIM2_chr8_22575475_22599298	0/0	c0008	1059	3	0	0	3	0	0	copy fasta	PDLIM2	chr8	22575475	22599298
PDLIM2_chr8_22575475_22599298	0/0	c0009	1060	3	0	2	1	0	0	copy fasta	PDLIM2	chr8	22575475	22599298
PDLIM2_chr8_22575475_22599298	0/0	c0010	1059	3	0	3	0	0	0	copy fasta	PDLIM2	chr8	22575475	22599298
PDLIM2_chr8_22575475_22599298	0/0	c0011	1061	2	0	0	2	0	0	copy fasta	PDLIM2	chr8	22575475	22599298
PDLIM2_chr8_22575475_22599298	0/0	c0012	1059	2	0	1	0	1	0	copy fasta	PDLIM2	chr8	22575475	22599298
PDLIM2_chr8_22575475_22599298	0/0	c0013	1060	1	0	1	0	0	0	copy fasta	PDLIM2	chr8	22575475	22599298
PDLIM2_chr8_22575475_22599298	0/0	c0014	1060	1	1	0	0	0	0	copy fasta	PDLIM2	chr8	22575475	22599298
PDLIM2_chr8_22575475_22599298	0/0	c0015	1059	1	0	1	0	0	0	copy fasta	PDLIM2	chr8	22575475	22599298
PDLIM2_chr8_22575475_22599298	0/0	c0016	1059	1	0	0	0	0	1	copy fasta	PDLIM2	chr8	22575475	22599298
PDLIM2_chr8_22575475_22599298	0/0	c0017	1061	1	1	0	0	0	0	copy fasta	PDLIM2	chr8	22575475	22599298
PDLIM2_chr8_22575475_22599298	0/0	c0018	1060	1	1	0	0	0	0	copy fasta	PDLIM2	chr8	22575475	22599298
PDLIM2_chr8_22575475_22599298	0/0	c0019	1059	1	1	0	0	0	0	copy fasta	PDLIM2	chr8	22575475	22599298
PDLIM2_chr8_22575475_22599298	0/0	c0020	1059	1	0	0	1	0	0	copy fasta	PDLIM2	chr8	22575475	22599298
PDLIM2_chr8_22575475_22599298	0/0	c0021	1060	1	0	1	0	0	0	copy fasta	PDLIM2	chr8	22575475	22599298
PDLIM2_chr8_22575475_22599298	0/0	c0022	1059	1	0	0	0	0	1	copy fasta	PDLIM2	chr8	22575475	22599298
PDLIM3_chr4_185495660_185540507	0/1	c0001	1095	257	28	47	143	10	28	copy fasta	PDLIM3	chr4	185495660	185540507
PDLIM3_chr4_185495660_185540507	1/0	c0002	1095	119	42	22	36	3	15	copy fasta	PDLIM3	chr4	185495660	185540507
PDLIM3_chr4_185495660_185540507	0/0	c0003	1095	10	9	1	0	0	0	copy fasta	PDLIM3	chr4	185495660	185540507
PDLIM3_chr4_185495660_185540507	0/0	c0004	1095	7	7	0	0	0	0	copy fasta	PDLIM3	chr4	185495660	185540507
PDLIM3_chr4_185495660_185540507	0/0	c0005	1095	4	4	0	0	0	0	copy fasta	PDLIM3	chr4	185495660	185540507
PDLIM3_chr4_185495660_185540507	0/0	c0006	1095	3	0	2	0	1	0	copy fasta	PDLIM3	chr4	185495660	185540507
PDLIM3_chr4_185495660_185540507	0/0	c0007	1095	3	0	0	3	0	0	copy fasta	PDLIM3	chr4	185495660	185540507
PDLIM3_chr4_185495660_185540507	0/0	c0008	1095	1	0	0	0	0	1	copy fasta	PDLIM3	chr4	185495660	185540507
PDLIM3_chr4_185495660_185540507	0/0	c0009	1095	1	1	0	0	0	0	copy fasta	PDLIM3	chr4	185495660	185540507
PDLIM3_chr4_185495660_185540507	0/0	c0010	1095	1	1	0	0	0	0	copy fasta	PDLIM3	chr4	185495660	185540507
PDLIM3_chr4_185495660_185540507	0/0	c0011	1095	1	1	0	0	0	0	copy fasta	PDLIM3	chr4	185495660	185540507
PDLIM3_chr4_185495660_185540507	0/0	c0012	1095	1	0	0	1	0	0	copy fasta	PDLIM3	chr4	185495660	185540507
PDLIM3_chr4_185495660_185540507	0/0	c0013	1095	1	0	0	1	0	0	copy fasta	PDLIM3	chr4	185495660	185540507
PDLIM3_chr4_185495660_185540507	0/0	c0014	1095	1	0	0	1	0	0	copy fasta	PDLIM3	chr4	185495660	185540507
PDLIM3_chr4_185495660_185540507	0/0	c0015	1095	1	1	0	0	0	0	copy fasta	PDLIM3	chr4	185495660	185540507
PDLIM3_chr4_185495660_185540507	0/0	c0016	1095	1	0	0	1	0	0	copy fasta	PDLIM3	chr4	185495660	185540507
PDLIM4_chr5_132252696_132278454	1/1	c0001	993	154	18	29	78	8	19	copy fasta	PDLIM4	chr5	132252696	132278454
PDLIM4_chr5_132252696_132278454	0/0	c0002	993	68	11	7	45	1	4	copy fasta	PDLIM4	chr5	132252696	132278454
PDLIM4_chr5_132252696_132278454	0/0	c0003	993	68	22	7	36	0	3	copy fasta	PDLIM4	chr5	132252696	132278454
PDLIM4_chr5_132252696_132278454	0/0	c0004	993	66	15	28	12	5	6	copy fasta	PDLIM4	chr5	132252696	132278454
PDLIM4_chr5_132252696_132278454	0/0	c0005	993	30	18	12	0	0	0	copy fasta	PDLIM4	chr5	132252696	132278454
PDLIM4_chr5_132252696_132278454	0/0	c0006	993	14	13	1	0	0	0	copy fasta	PDLIM4	chr5	132252696	132278454
PDLIM4_chr5_132252696_132278454	0/0	c0007	993	6	0	0	6	0	0	copy fasta	PDLIM4	chr5	132252696	132278454
PDLIM4_chr5_132252696_132278454	0/0	c0008	993	2	2	0	0	0	0	copy fasta	PDLIM4	chr5	132252696	132278454
PDLIM4_chr5_132252696_132278454	0/0	c0009	993	1	1	0	0	0	0	copy fasta	PDLIM4	chr5	132252696	132278454
PDLIM4_chr5_132252696_132278454	0/0	c0010	993	1	0	0	1	0	0	copy fasta	PDLIM4	chr5	132252696	132278454
PDLIM5_chr4_94446942_94673223	0/0	c0001	1791	54	34	5	13	1	1	copy fasta	PDLIM5	chr4	94446942	94673223
PDLIM5_chr4_94446942_94673223	0/0	c0002	1791	43	15	15	8	1	4	copy fasta	PDLIM5	chr4	94446942	94673223
PDLIM5_chr4_94446942_94673223	0/0	c0003	1791	39	6	5	20	7	1	copy fasta	PDLIM5	chr4	94446942	94673223