JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PDLIM5_chr4_94446942_94673223	0/0	c0004	1791	31	3	12	9	2	5	copy fasta	PDLIM5	chr4	94446942	94673223
PDLIM5_chr4_94446942_94673223	0/0	c0005	1791	16	1	0	13	2	0	copy fasta	PDLIM5	chr4	94446942	94673223
PDLIM5_chr4_94446942_94673223	0/1	c0006	1791	12	1	0	6	0	4	copy fasta	PDLIM5	chr4	94446942	94673223
PDLIM5_chr4_94446942_94673223	0/0	c0007	1791	7	4	0	0	1	2	copy fasta	PDLIM5	chr4	94446942	94673223
PDLIM5_chr4_94446942_94673223	1/0	c0008	1791	4	0	1	0	0	2	copy fasta	PDLIM5	chr4	94446942	94673223
PDLIM5_chr4_94446942_94673223	0/0	c0009	1791	3	0	0	3	0	0	copy fasta	PDLIM5	chr4	94446942	94673223
PDLIM5_chr4_94446942_94673223	0/0	c0010	1791	3	3	0	0	0	0	copy fasta	PDLIM5	chr4	94446942	94673223
PDLIM5_chr4_94446942_94673223	0/0	c0011	1791	1	1	0	0	0	0	copy fasta	PDLIM5	chr4	94446942	94673223
PDLIM5_chr4_94446942_94673223	0/0	c0012	1791	1	1	0	0	0	0	copy fasta	PDLIM5	chr4	94446942	94673223
PDLIM5_chr4_94446942_94673223	0/0	c0013	1791	1	1	0	0	0	0	copy fasta	PDLIM5	chr4	94446942	94673223
PDLIM5_chr4_94446942_94673223	0/0	c0014	1791	1	0	0	0	0	1	copy fasta	PDLIM5	chr4	94446942	94673223
PDLIM5_chr4_94446942_94673223	0/0	c0015	1791	1	1	0	0	0	0	copy fasta	PDLIM5	chr4	94446942	94673223
PDLIM5_chr4_94446942_94673223	0/0	c0016	1791	1	1	0	0	0	0	copy fasta	PDLIM5	chr4	94446942	94673223
PDLIM7_chr5_177478394_177502604	1/0	c0001	1374	163	37	40	66	9	10	copy fasta	PDLIM7	chr5	177478394	177502604
PDLIM7_chr5_177478394_177502604	0/1	c0002	1374	157	36	22	61	7	30	copy fasta	PDLIM7	chr5	177478394	177502604
PDLIM7_chr5_177478394_177502604	0/0	c0003	1374	87	14	9	58	0	6	copy fasta	PDLIM7	chr5	177478394	177502604
PDLIM7_chr5_177478394_177502604	0/0	c0004	1374	6	1	2	1	2	0	copy fasta	PDLIM7	chr5	177478394	177502604
PDLIM7_chr5_177478394_177502604	0/0	c0005	1374	4	0	4	0	0	0	copy fasta	PDLIM7	chr5	177478394	177502604
PDLIM7_chr5_177478394_177502604	0/0	c0006	1374	4	3	1	0	0	0	copy fasta	PDLIM7	chr5	177478394	177502604
PDLIM7_chr5_177478394_177502604	0/0	c0007	1374	2	0	2	0	0	0	copy fasta	PDLIM7	chr5	177478394	177502604
PDLIM7_chr5_177478394_177502604	0/0	c0008	1374	1	1	0	0	0	0	copy fasta	PDLIM7	chr5	177478394	177502604
PDLIM7_chr5_177478394_177502604	0/0	c0009	1374	1	1	0	0	0	0	copy fasta	PDLIM7	chr5	177478394	177502604
PDLIM7_chr5_177478394_177502604	0/0	c0010	1374	1	1	0	0	0	0	copy fasta	PDLIM7	chr5	177478394	177502604
PDLIM7_chr5_177478394_177502604	0/0	c0011	1374	1	0	1	0	0	0	copy fasta	PDLIM7	chr5	177478394	177502604
PDLIM7_chr5_177478394_177502604	0/0	c0012	1374	1	1	0	0	0	0	copy fasta	PDLIM7	chr5	177478394	177502604
PDLIM7_chr5_177478394_177502604	0/0	c0013	1374	1	1	0	0	0	0	copy fasta	PDLIM7	chr5	177478394	177502604
PDLIM7_chr5_177478394_177502604	0/0	c0014	1374	1	1	0	0	0	0	copy fasta	PDLIM7	chr5	177478394	177502604
PDLIM7_chr5_177478394_177502604	0/0	c0015	1374	1	0	1	0	0	0	copy fasta	PDLIM7	chr5	177478394	177502604
PDLIM7_chr5_177478394_177502604	0/0	c0016	1374	1	0	0	1	0	0	copy fasta	PDLIM7	chr5	177478394	177502604
PDLIM7_chr5_177478394_177502604	0/0	c0017	1374	1	0	0	1	0	0	copy fasta	PDLIM7	chr5	177478394	177502604
PDLIM7_chr5_177478394_177502604	0/0	c0018	1374	1	0	0	1	0	0	copy fasta	PDLIM7	chr5	177478394	177502604
PDLIM7_chr5_177478394_177502604	0/0	c0019	1374	1	0	1	0	0	0	copy fasta	PDLIM7	chr5	177478394	177502604
PDLIM7_chr5_177478394_177502604	0/0	c0020	1374	1	1	0	0	0	0	copy fasta	PDLIM7	chr5	177478394	177502604
PDLIM7_chr5_177478394_177502604	0/0	c0021	1374	1	0	0	1	0	0	copy fasta	PDLIM7	chr5	177478394	177502604
PDLIM7_chr5_177478394_177502604	0/0	c0022	1374	1	0	1	0	0	0	copy fasta	PDLIM7	chr5	177478394	177502604
PDLIM7_chr5_177478394_177502604	0/0	c0023	1374	1	0	0	1	0	0	copy fasta	PDLIM7	chr5	177478394	177502604
PDLIM7_chr5_177478394_177502604	0/0	c0024	1362	1	0	0	1	0	0	copy fasta	PDLIM7	chr5	177478394	177502604
PDP1_chr8_93911923_93931068	1/1	c0001	1614	387	95	68	171	15	36	copy fasta	PDP1	chr8	93911923	93931068
PDP1_chr8_93911923_93931068	0/0	c0002	1614	1	1	0	0	0	0	copy fasta	PDP1	chr8	93911923	93931068
PDP1_chr8_93911923_93931068	0/0	c0003	1614	1	0	0	0	1	0	copy fasta	PDP1	chr8	93911923	93931068
PDP1_chr8_93911923_93931068	0/0	c0004	1614	1	0	0	1	0	0	copy fasta	PDP1	chr8	93911923	93931068
PDP2_chr16_66875515_66896101	1/1	c0001	1590	350	90	64	138	16	40	copy fasta	PDP2	chr16	66875515	66896101
PDP2_chr16_66875515_66896101	0/0	c0002	1590	1	0	0	0	0	1	copy fasta	PDP2	chr16	66875515	66896101
PDP2_chr16_66875515_66896101	0/0	c0003	1590	1	0	0	1	0	0	copy fasta	PDP2	chr16	66875515	66896101
PDP2_chr16_66875515_66896101	0/0	c0004	1590	1	0	0	1	0	0	copy fasta	PDP2	chr16	66875515	66896101
PDP2_chr16_66875515_66896101	0/0	c0005	1590	1	0	0	0	0	1	copy fasta	PDP2	chr16	66875515	66896101
PDP2_chr16_66875515_66896101	0/0	c0006	1590	1	1	0	0	0	0	copy fasta	PDP2	chr16	66875515	66896101
PDP2_chr16_66875515_66896101	0/0	c0007	1590	1	1	0	0	0	0	copy fasta	PDP2	chr16	66875515	66896101
PDPK1_chr16_2533021_2608188	1/1	c0001	1671	161	58	37	44	8	12	copy fasta	PDPK1	chr16	2533021	2608188
PDPK1_chr16_2533021_2608188	0/0	c0002	1671	13	13	0	0	0	0	copy fasta	PDPK1	chr16	2533021	2608188