JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PDPK1_chr16_2533021_2608188	0/0	c0003	1671	7	5	1	1	0	0	copy fasta	PDPK1	chr16	2533021	2608188
PDPK1_chr16_2533021_2608188	0/0	c0004	1671	1	0	0	1	0	0	copy fasta	PDPK1	chr16	2533021	2608188
PDPK1_chr16_2533021_2608188	0/0	c0005	1671	1	0	1	0	0	0	copy fasta	PDPK1	chr16	2533021	2608188
PDPK1_chr16_2533021_2608188	0/0	c0006	1671	1	0	1	0	0	0	copy fasta	PDPK1	chr16	2533021	2608188
PDPN_chr1_13578832_13622957	0/1	c0001	489	428	84	65	213	17	48	copy fasta	PDPN	chr1	13578832	13622957
PDPN_chr1_13578832_13622957	0/0	c0002	489	9	8	1	0	0	0	copy fasta	PDPN	chr1	13578832	13622957
PDPN_chr1_13578832_13622957	1/0	c0003	489	5	0	2	0	1	1	copy fasta	PDPN	chr1	13578832	13622957
PDPN_chr1_13578832_13622957	0/0	c0004	489	2	2	0	0	0	0	copy fasta	PDPN	chr1	13578832	13622957
PDPN_chr1_13578832_13622957	0/0	c0005	489	1	0	0	0	0	1	copy fasta	PDPN	chr1	13578832	13622957
PDPN_chr1_13578832_13622957	0/0	c0006	489	1	0	0	1	0	0	copy fasta	PDPN	chr1	13578832	13622957
PDPR_chr16_70109332_70167537	1/0	c0001	2640	144	31	21	65	5	21	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	c0002	2640	88	15	19	47	2	5	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	c0003	2640	26	0	8	17	1	0	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	c0004	2640	9	9	0	0	0	0	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	c0005	2640	5	5	0	0	0	0	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	c0006	2640	3	3	0	0	0	0	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	c0007	2640	2	1	1	0	0	0	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	c0008	2640	1	0	0	1	0	0	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	c0009	2640	1	1	0	0	0	0	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	c0010	2640	1	0	0	1	0	0	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	c0011	2640	1	1	0	0	0	0	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	c0012	2640	1	0	1	0	0	0	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	c0013	2640	1	1	0	0	0	0	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	c0014	2640	1	0	0	1	0	0	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	c0015	2640	1	0	0	1	0	0	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	c0016	2640	1	0	0	1	0	0	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	c0017	2640	1	1	0	0	0	0	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	c0018	2640	1	1	0	0	0	0	copy fasta	PDPR	chr16	70109332	70167537
PDPR_chr16_70109332_70167537	0/0	c0019	2640	1	1	0	0	0	0	copy fasta	PDPR	chr16	70109332	70167537
PDRG1_chr20_31939337_31957046	1/1	c0001	402	341	97	70	112	14	46	copy fasta	PDRG1	chr20	31939337	31957046
PDRG1_chr20_31939337_31957046	0/0	c0002	402	1	0	0	1	0	0	copy fasta	PDRG1	chr20	31939337	31957046
PDRG1_chr20_31939337_31957046	0/0	c0003	402	1	0	0	1	0	0	copy fasta	PDRG1	chr20	31939337	31957046
PDRG1_chr20_31939337_31957046	0/0	c0004	402	1	1	0	0	0	0	copy fasta	PDRG1	chr20	31939337	31957046
PDS5A_chr4_39817863_39982911	1/0	c0001	4014	171	58	43	44	5	20	copy fasta	PDS5A	chr4	39817863	39982911
PDS5A_chr4_39817863_39982911	0/1	c0002	4014	169	13	18	111	6	20	copy fasta	PDS5A	chr4	39817863	39982911
PDS5A_chr4_39817863_39982911	0/0	c0003	4014	3	1	2	0	0	0	copy fasta	PDS5A	chr4	39817863	39982911
PDS5A_chr4_39817863_39982911	0/0	c0004	4014	2	2	0	0	0	0	copy fasta	PDS5A	chr4	39817863	39982911
PDS5A_chr4_39817863_39982911	0/0	c0005	4014	2	2	0	0	0	0	copy fasta	PDS5A	chr4	39817863	39982911
PDS5A_chr4_39817863_39982911	0/0	c0006	4014	1	0	0	1	0	0	copy fasta	PDS5A	chr4	39817863	39982911
PDS5A_chr4_39817863_39982911	0/0	c0007	4014	1	0	0	1	0	0	copy fasta	PDS5A	chr4	39817863	39982911
PDS5A_chr4_39817863_39982911	0/0	c0008	4014	1	0	0	1	0	0	copy fasta	PDS5A	chr4	39817863	39982911
PDS5A_chr4_39817863_39982911	0/0	c0009	4014	1	0	0	0	1	0	copy fasta	PDS5A	chr4	39817863	39982911
PDS5A_chr4_39817863_39982911	0/0	c0010	4014	1	1	0	0	0	0	copy fasta	PDS5A	chr4	39817863	39982911
PDS5A_chr4_39817863_39982911	0/0	c0011	4014	1	1	0	0	0	0	copy fasta	PDS5A	chr4	39817863	39982911
PDS5A_chr4_39817863_39982911	0/0	c0012	4014	1	1	0	0	0	0	copy fasta	PDS5A	chr4	39817863	39982911
PDS5A_chr4_39817863_39982911	0/0	c0013	4014	1	1	0	0	0	0	copy fasta	PDS5A	chr4	39817863	39982911
PDS5A_chr4_39817863_39982911	0/0	c0014	4014	1	0	1	0	0	0	copy fasta	PDS5A	chr4	39817863	39982911
PDS5B_chr13_32581452_32783019	1/0	c0001	4344	226	63	26	100	5	31	copy fasta	PDS5B	chr13	32581452	32783019
PDS5B_chr13_32581452_32783019	0/1	c0002	4344	90	24	19	34	5	7	copy fasta	PDS5B	chr13	32581452	32783019
PDS5B_chr13_32581452_32783019	0/0	c0003	4344	4	0	0	4	0	0	copy fasta	PDS5B	chr13	32581452	32783019