JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PDS5B_chr13_32581452_32783019	0/0	c0004	4344	3	0	3	0	0	0	copy fasta	PDS5B	chr13	32581452	32783019
PDS5B_chr13_32581452_32783019	0/0	c0005	4344	2	1	1	0	0	0	copy fasta	PDS5B	chr13	32581452	32783019
PDS5B_chr13_32581452_32783019	0/0	c0006	4344	1	0	0	1	0	0	copy fasta	PDS5B	chr13	32581452	32783019
PDS5B_chr13_32581452_32783019	0/0	c0007	4344	1	0	0	1	0	0	copy fasta	PDS5B	chr13	32581452	32783019
PDS5B_chr13_32581452_32783019	0/0	c0008	4344	1	0	0	1	0	0	copy fasta	PDS5B	chr13	32581452	32783019
PDS5B_chr13_32581452_32783019	0/0	c0009	4344	1	0	0	1	0	0	copy fasta	PDS5B	chr13	32581452	32783019
PDS5B_chr13_32581452_32783019	0/0	c0010	4344	1	1	0	0	0	0	copy fasta	PDS5B	chr13	32581452	32783019
PDS5B_chr13_32581452_32783019	0/0	c0011	4344	1	0	1	0	0	0	copy fasta	PDS5B	chr13	32581452	32783019
PDS5B_chr13_32581452_32783019	0/0	c0012	4344	1	0	1	0	0	0	copy fasta	PDS5B	chr13	32581452	32783019
PDS5B_chr13_32581452_32783019	0/0	c0013	4344	1	1	0	0	0	0	copy fasta	PDS5B	chr13	32581452	32783019
PDS5B_chr13_32581452_32783019	0/0	c0014	4344	1	0	1	0	0	0	copy fasta	PDS5B	chr13	32581452	32783019
PDSS1_chr10_26692701_26751798	1/1	c0001	1248	400	86	77	174	18	43	copy fasta	PDSS1	chr10	26692701	26751798
PDSS1_chr10_26692701_26751798	0/0	c0002	1248	11	10	1	0	0	0	copy fasta	PDSS1	chr10	26692701	26751798
PDSS1_chr10_26692701_26751798	0/0	c0003	1248	3	0	0	3	0	0	copy fasta	PDSS1	chr10	26692701	26751798
PDSS1_chr10_26692701_26751798	0/0	c0004	1275	1	0	0	1	0	0	copy fasta	PDSS1	chr10	26692701	26751798
PDSS1_chr10_26692701_26751798	0/0	c0005	1248	1	0	0	0	0	1	copy fasta	PDSS1	chr10	26692701	26751798
PDSS2_chr6_107147562_107464564	1/1	c0001	1200	250	88	42	84	6	28	copy fasta	PDSS2	chr6	107147562	107464564
PDSS2_chr6_107147562_107464564	0/0	c0002	1200	8	0	0	8	0	0	copy fasta	PDSS2	chr6	107147562	107464564
PDSS2_chr6_107147562_107464564	0/0	c0003	1200	1	0	0	1	0	0	copy fasta	PDSS2	chr6	107147562	107464564
PDSS2_chr6_107147562_107464564	0/0	c0004	1200	1	0	0	1	0	0	copy fasta	PDSS2	chr6	107147562	107464564
PDX1_chr13_27915000_27931313	1/1	c0001	852	413	77	74	200	14	46	copy fasta	PDX1	chr13	27915000	27931313
PDX1_chr13_27915000_27931313	0/0	c0002	855	9	8	1	0	0	0	copy fasta	PDX1	chr13	27915000	27931313
PDX1_chr13_27915000_27931313	0/0	c0003	852	3	0	2	0	0	1	copy fasta	PDX1	chr13	27915000	27931313
PDX1_chr13_27915000_27931313	0/0	c0004	852	3	2	1	0	0	0	copy fasta	PDX1	chr13	27915000	27931313
PDX1_chr13_27915000_27931313	0/0	c0005	852	2	2	0	0	0	0	copy fasta	PDX1	chr13	27915000	27931313
PDX1_chr13_27915000_27931313	0/0	c0006	852	1	0	0	0	0	1	copy fasta	PDX1	chr13	27915000	27931313
PDX1_chr13_27915000_27931313	0/0	c0007	852	1	0	0	1	0	0	copy fasta	PDX1	chr13	27915000	27931313
PDX1_chr13_27915000_27931313	0/0	c0008	852	1	0	0	1	0	0	copy fasta	PDX1	chr13	27915000	27931313
PDX1_chr13_27915000_27931313	0/0	c0009	852	1	1	0	0	0	0	copy fasta	PDX1	chr13	27915000	27931313
PDXDC1_chr16_14970026_15043332	0/1	c0001	2367	134	38	12	68	4	11	copy fasta	PDXDC1	chr16	14970026	15043332
PDXDC1_chr16_14970026_15043332	0/0	c0002	2367	85	5	20	45	2	13	copy fasta	PDXDC1	chr16	14970026	15043332
PDXDC1_chr16_14970026_15043332	0/0	c0003	2367	18	0	10	0	0	8	copy fasta	PDXDC1	chr16	14970026	15043332
PDXDC1_chr16_14970026_15043332	0/0	c0004	2367	17	0	0	17	0	0	copy fasta	PDXDC1	chr16	14970026	15043332
PDXDC1_chr16_14970026_15043332	0/0	c0005	2367	4	4	0	0	0	0	copy fasta	PDXDC1	chr16	14970026	15043332
PDXDC1_chr16_14970026_15043332	0/0	c0006	2367	4	4	0	0	0	0	copy fasta	PDXDC1	chr16	14970026	15043332
PDXDC1_chr16_14970026_15043332	0/0	c0007	2367	3	0	1	1	0	1	copy fasta	PDXDC1	chr16	14970026	15043332
PDXDC1_chr16_14970026_15043332	0/0	c0008	2367	2	0	0	1	0	1	copy fasta	PDXDC1	chr16	14970026	15043332
PDXDC1_chr16_14970026_15043332	0/0	c0009	2367	2	0	0	2	0	0	copy fasta	PDXDC1	chr16	14970026	15043332
PDXDC1_chr16_14970026_15043332	0/0	c0010	2367	2	0	0	1	0	1	copy fasta	PDXDC1	chr16	14970026	15043332
PDXDC1_chr16_14970026_15043332	0/0	c0011	2367	1	1	0	0	0	0	copy fasta	PDXDC1	chr16	14970026	15043332
PDXDC1_chr16_14970026_15043332	0/0	c0012	2367	1	1	0	0	0	0	copy fasta	PDXDC1	chr16	14970026	15043332
PDXDC1_chr16_14970026_15043332	0/0	c0013	2361	1	0	0	1	0	0	copy fasta	PDXDC1	chr16	14970026	15043332
PDXDC1_chr16_14970026_15043332	0/0	c0014	2367	1	0	0	0	0	1	copy fasta	PDXDC1	chr16	14970026	15043332
PDXDC1_chr16_14970026_15043332	0/0	c0015	2367	1	0	1	0	0	0	copy fasta	PDXDC1	chr16	14970026	15043332
PDXDC1_chr16_14970026_15043332	0/0	c0016	2367	1	1	0	0	0	0	copy fasta	PDXDC1	chr16	14970026	15043332
PDXDC1_chr16_14970026_15043332	0/0	c0017	2367	1	1	0	0	0	0	copy fasta	PDXDC1	chr16	14970026	15043332
PDXDC1_chr16_14970026_15043332	0/0	c0018	2367	1	1	0	0	0	0	copy fasta	PDXDC1	chr16	14970026	15043332
PDXK_chr21_43714129_43767299	1/1	c0001	939	285	72	65	102	13	31	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	c0002	939	57	9	10	32	1	5	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	c0003	939	12	10	2	0	0	0	copy fasta	PDXK	chr21	43714129	43767299