JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PDXK_chr21_43714129_43767299	0/0	c0004	939	2	2	0	0	0	0	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	c0005	939	1	1	0	0	0	0	copy fasta	PDXK	chr21	43714129	43767299
PDXK_chr21_43714129_43767299	0/0	c0006	939	1	0	1	0	0	0	copy fasta	PDXK	chr21	43714129	43767299
PDXP_chr22_37653723_37671932	1/1	c0001	891	413	94	73	187	16	41	copy fasta	PDXP	chr22	37653723	37671932
PDXP_chr22_37653723_37671932	0/0	c0002	891	1	1	0	0	0	0	copy fasta	PDXP	chr22	37653723	37671932
PDXP_chr22_37653723_37671932	0/0	c0003	891	1	0	0	1	0	0	copy fasta	PDXP	chr22	37653723	37671932
PDXP_chr22_37653723_37671932	0/0	c0004	891	1	0	1	0	0	0	copy fasta	PDXP	chr22	37653723	37671932
PDXP_chr22_37653723_37671932	0/0	c0005	891	1	0	0	0	0	1	copy fasta	PDXP	chr22	37653723	37671932
PDXP_chr22_37653723_37671932	0/0	c0006	891	1	1	0	0	0	0	copy fasta	PDXP	chr22	37653723	37671932
PDYN_chr20_1973759_1999058	1/1	c0001	765	343	58	68	165	10	40	copy fasta	PDYN	chr20	1973759	1999058
PDYN_chr20_1973759_1999058	0/0	c0002	765	38	31	5	0	2	0	copy fasta	PDYN	chr20	1973759	1999058
PDYN_chr20_1973759_1999058	0/0	c0003	765	3	3	0	0	0	0	copy fasta	PDYN	chr20	1973759	1999058
PDYN_chr20_1973759_1999058	0/0	c0004	765	1	0	0	1	0	0	copy fasta	PDYN	chr20	1973759	1999058
PDYN_chr20_1973759_1999058	0/0	c0005	765	1	0	0	1	0	0	copy fasta	PDYN	chr20	1973759	1999058
PDYN_chr20_1973759_1999058	0/0	c0006	765	1	1	0	0	0	0	copy fasta	PDYN	chr20	1973759	1999058
PDYN_chr20_1973759_1999058	0/0	c0007	765	1	0	1	0	0	0	copy fasta	PDYN	chr20	1973759	1999058
PDYN_chr20_1973759_1999058	0/0	c0008	765	1	0	0	1	0	0	copy fasta	PDYN	chr20	1973759	1999058
PDYN_chr20_1973759_1999058	0/0	c0009	765	1	1	0	0	0	0	copy fasta	PDYN	chr20	1973759	1999058
PDZD11_chrX_70281595_70294927	1/1	c0001	423	307	74	52	136	13	30	copy fasta	PDZD11	chrX	70281595	70294927
PDZD11_chrX_70281595_70294927	0/0	c0002	423	1	0	1	0	0	0	copy fasta	PDZD11	chrX	70281595	70294927
PDZD11_chrX_70281595_70294927	0/0	c0003	423	1	0	0	1	0	0	copy fasta	PDZD11	chrX	70281595	70294927
PDZD11_chrX_70281595_70294927	0/0	c0004	425	1	0	0	1	0	0	copy fasta	PDZD11	chrX	70281595	70294927
PDZD2_chr5_31634131_32115932	0/1	c0001	8520	62	14	19	17	3	8	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	c0002	8520	22	3	7	7	0	5	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	c0003	8520	21	3	1	12	0	5	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	c0004	8520	17	1	0	13	0	3	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	1/0	c0005	8520	8	2	3	2	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	c0006	8520	8	7	1	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	c0007	8520	5	5	0	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	c0008	8520	4	0	0	4	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	c0009	8520	4	4	0	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	c0010	8520	3	3	0	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	c0011	8520	3	0	0	1	0	2	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	c0012	8520	2	0	0	1	1	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	c0013	8520	2	2	0	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	c0014	8520	2	2	0	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	c0015	8520	2	1	1	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	c0016	8520	2	1	0	0	1	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	c0017	8520	1	1	0	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	c0018	8520	1	1	0	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	c0019	8520	1	1	0	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	c0020	8520	1	1	0	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	c0021	8520	1	0	0	0	0	1	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	c0022	8520	1	0	1	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	c0023	8520	1	1	0	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	c0024	8520	1	1	0	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	c0025	8520	1	0	0	1	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	c0026	8520	1	0	0	0	0	1	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	c0027	8520	1	0	0	1	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	c0028	8520	1	0	1	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932