JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PDZD2_chr5_31634131_32115932	0/0	c0029	8520	1	1	0	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	c0030	8520	1	1	0	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	c0031	8520	1	0	1	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	c0032	8520	1	0	1	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	c0033	8520	1	0	1	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	c0034	8520	1	1	0	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	c0035	8520	1	1	0	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	c0036	8520	1	1	0	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	c0037	8520	1	0	1	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	c0038	8520	1	0	1	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	c0039	8520	1	1	0	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	c0040	8520	1	0	0	0	0	1	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	c0041	8520	1	1	0	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	c0042	8520	1	1	0	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	c0043	8520	1	0	0	0	1	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	c0044	8520	1	0	0	0	0	1	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	c0045	8520	1	1	0	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	c0046	8520	1	1	0	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	c0047	8520	1	1	0	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	c0048	8520	1	1	0	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	c0049	8520	1	1	0	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	c0050	8520	1	1	0	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	c0051	8520	1	0	1	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	c0052	8520	1	1	0	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	c0053	8520	1	1	0	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	c0054	8520	1	1	0	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	c0055	8520	1	1	0	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	c0056	8520	1	1	0	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	c0057	8520	1	0	0	0	0	1	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	c0058	8520	1	0	0	1	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	c0059	8520	1	1	0	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	c0060	8520	1	1	0	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	c0061	8520	1	1	0	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	c0062	8520	1	0	0	1	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	c0063	8520	1	0	0	1	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	c0064	8520	1	1	0	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	c0065	8520	1	1	0	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD4_chrX_153797166_153835544	1/0	c0001	2328	210	59	40	76	7	27	copy fasta	PDZD4	chrX	153797166	153835544
PDZD4_chrX_153797166_153835544	0/0	c0002	2328	41	10	8	19	2	2	copy fasta	PDZD4	chrX	153797166	153835544
PDZD4_chrX_153797166_153835544	0/0	c0003	2329	5	1	1	3	0	0	copy fasta	PDZD4	chrX	153797166	153835544
PDZD4_chrX_153797166_153835544	0/0	c0004	2328	3	3	0	0	0	0	copy fasta	PDZD4	chrX	153797166	153835544
PDZD4_chrX_153797166_153835544	0/0	c0005	2329	3	1	0	2	0	0	copy fasta	PDZD4	chrX	153797166	153835544
PDZD4_chrX_153797166_153835544	0/0	c0006	2329	3	0	0	2	0	1	copy fasta	PDZD4	chrX	153797166	153835544
PDZD4_chrX_153797166_153835544	0/0	c0007	2330	2	1	0	1	0	0	copy fasta	PDZD4	chrX	153797166	153835544
PDZD4_chrX_153797166_153835544	0/0	c0008	2329	2	1	0	0	0	1	copy fasta	PDZD4	chrX	153797166	153835544
PDZD4_chrX_153797166_153835544	0/0	c0009	2328	1	0	0	1	0	0	copy fasta	PDZD4	chrX	153797166	153835544
PDZD4_chrX_153797166_153835544	0/0	c0010	2328	1	0	0	1	0	0	copy fasta	PDZD4	chrX	153797166	153835544
PDZD4_chrX_153797166_153835544	0/0	c0011	2329	1	0	0	1	0	0	copy fasta	PDZD4	chrX	153797166	153835544
PDZD4_chrX_153797166_153835544	0/0	c0012	2328	1	1	0	0	0	0	copy fasta	PDZD4	chrX	153797166	153835544
PDZD4_chrX_153797166_153835544	0/0	c0013	2328	1	0	1	0	0	0	copy fasta	PDZD4	chrX	153797166	153835544