JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ARHGEF16_chr1_3449665_3486113	0/0	c0035	2130	1	1	0	0	0	0	copy fasta	ARHGEF16	chr1	3449665	3486113
ARHGEF16_chr1_3449665_3486113	0/0	c0036	2130	1	0	0	1	0	0	copy fasta	ARHGEF16	chr1	3449665	3486113
ARHGEF17_chr11_73303276_73374388	1/1	c0001	6192	104	15	28	42	8	9	copy fasta	ARHGEF17	chr11	73303276	73374388
ARHGEF17_chr11_73303276_73374388	0/0	c0002	6195	23	22	1	0	0	0	copy fasta	ARHGEF17	chr11	73303276	73374388
ARHGEF17_chr11_73303276_73374388	0/0	c0003	6195	22	16	0	6	0	0	copy fasta	ARHGEF17	chr11	73303276	73374388
ARHGEF17_chr11_73303276_73374388	0/0	c0004	6195	10	0	6	0	3	1	copy fasta	ARHGEF17	chr11	73303276	73374388
ARHGEF17_chr11_73303276_73374388	0/0	c0005	6195	7	0	3	0	1	3	copy fasta	ARHGEF17	chr11	73303276	73374388
ARHGEF17_chr11_73303276_73374388	0/0	c0006	6195	6	6	0	0	0	0	copy fasta	ARHGEF17	chr11	73303276	73374388
ARHGEF17_chr11_73303276_73374388	0/0	c0007	6195	5	5	0	0	0	0	copy fasta	ARHGEF17	chr11	73303276	73374388
ARHGEF17_chr11_73303276_73374388	0/0	c0008	6195	5	4	1	0	0	0	copy fasta	ARHGEF17	chr11	73303276	73374388
ARHGEF17_chr11_73303276_73374388	0/0	c0009	6192	4	0	0	4	0	0	copy fasta	ARHGEF17	chr11	73303276	73374388
ARHGEF17_chr11_73303276_73374388	0/0	c0010	6192	3	0	0	3	0	0	copy fasta	ARHGEF17	chr11	73303276	73374388
ARHGEF17_chr11_73303276_73374388	0/0	c0011	6192	3	3	0	0	0	0	copy fasta	ARHGEF17	chr11	73303276	73374388
ARHGEF17_chr11_73303276_73374388	0/0	c0012	6195	2	2	0	0	0	0	copy fasta	ARHGEF17	chr11	73303276	73374388
ARHGEF17_chr11_73303276_73374388	0/0	c0013	6192	2	0	1	0	0	1	copy fasta	ARHGEF17	chr11	73303276	73374388
ARHGEF17_chr11_73303276_73374388	0/0	c0014	6195	2	2	0	0	0	0	copy fasta	ARHGEF17	chr11	73303276	73374388
ARHGEF17_chr11_73303276_73374388	0/0	c0015	6195	2	2	0	0	0	0	copy fasta	ARHGEF17	chr11	73303276	73374388
ARHGEF17_chr11_73303276_73374388	0/0	c0016	6195	2	2	0	0	0	0	copy fasta	ARHGEF17	chr11	73303276	73374388
ARHGEF17_chr11_73303276_73374388	0/0	c0017	6192	1	0	1	0	0	0	copy fasta	ARHGEF17	chr11	73303276	73374388
ARHGEF17_chr11_73303276_73374388	0/0	c0018	6192	1	0	0	0	1	0	copy fasta	ARHGEF17	chr11	73303276	73374388
ARHGEF17_chr11_73303276_73374388	0/0	c0019	6192	1	0	0	1	0	0	copy fasta	ARHGEF17	chr11	73303276	73374388
ARHGEF17_chr11_73303276_73374388	0/0	c0020	6192	1	0	0	1	0	0	copy fasta	ARHGEF17	chr11	73303276	73374388
ARHGEF17_chr11_73303276_73374388	0/0	c0021	6192	1	1	0	0	0	0	copy fasta	ARHGEF17	chr11	73303276	73374388
ARHGEF17_chr11_73303276_73374388	0/0	c0022	6192	1	0	0	1	0	0	copy fasta	ARHGEF17	chr11	73303276	73374388
ARHGEF17_chr11_73303276_73374388	0/0	c0023	6192	1	0	0	1	0	0	copy fasta	ARHGEF17	chr11	73303276	73374388
ARHGEF17_chr11_73303276_73374388	0/0	c0024	6192	1	0	0	0	0	1	copy fasta	ARHGEF17	chr11	73303276	73374388
ARHGEF17_chr11_73303276_73374388	0/0	c0025	6192	1	0	0	1	0	0	copy fasta	ARHGEF17	chr11	73303276	73374388
ARHGEF17_chr11_73303276_73374388	0/0	c0026	6192	1	0	0	1	0	0	copy fasta	ARHGEF17	chr11	73303276	73374388
ARHGEF17_chr11_73303276_73374388	0/0	c0027	6192	1	0	0	1	0	0	copy fasta	ARHGEF17	chr11	73303276	73374388
ARHGEF17_chr11_73303276_73374388	0/0	c0028	6192	1	0	0	0	1	0	copy fasta	ARHGEF17	chr11	73303276	73374388
ARHGEF17_chr11_73303276_73374388	0/0	c0029	6192	1	1	0	0	0	0	copy fasta	ARHGEF17	chr11	73303276	73374388
ARHGEF17_chr11_73303276_73374388	0/0	c0030	6195	1	1	0	0	0	0	copy fasta	ARHGEF17	chr11	73303276	73374388
ARHGEF17_chr11_73303276_73374388	0/0	c0031	6195	1	1	0	0	0	0	copy fasta	ARHGEF17	chr11	73303276	73374388
ARHGEF17_chr11_73303276_73374388	0/0	c0032	6195	1	1	0	0	0	0	copy fasta	ARHGEF17	chr11	73303276	73374388
ARHGEF17_chr11_73303276_73374388	0/0	c0033	6195	1	1	0	0	0	0	copy fasta	ARHGEF17	chr11	73303276	73374388
ARHGEF17_chr11_73303276_73374388	0/0	c0034	6195	1	0	1	0	0	0	copy fasta	ARHGEF17	chr11	73303276	73374388
ARHGEF17_chr11_73303276_73374388	0/0	c0035	6195	1	1	0	0	0	0	copy fasta	ARHGEF17	chr11	73303276	73374388
ARHGEF17_chr11_73303276_73374388	0/0	c0036	6195	1	1	0	0	0	0	copy fasta	ARHGEF17	chr11	73303276	73374388
ARHGEF17_chr11_73303276_73374388	0/0	c0037	6195	1	1	0	0	0	0	copy fasta	ARHGEF17	chr11	73303276	73374388
ARHGEF17_chr11_73303276_73374388	0/0	c0038	6195	1	0	0	0	0	1	copy fasta	ARHGEF17	chr11	73303276	73374388
ARHGEF17_chr11_73303276_73374388	0/0	c0039	6192	1	0	0	0	0	1	copy fasta	ARHGEF17	chr11	73303276	73374388
ARHGEF17_chr11_73303276_73374388	0/0	c0040	6195	1	1	0	0	0	0	copy fasta	ARHGEF17	chr11	73303276	73374388
ARHGEF17_chr11_73303276_73374388	0/0	c0041	6195	1	0	0	0	0	1	copy fasta	ARHGEF17	chr11	73303276	73374388
ARHGEF17_chr11_73303276_73374388	0/0	c0042	6195	1	1	0	0	0	0	copy fasta	ARHGEF17	chr11	73303276	73374388
ARHGEF18_chr19_7343937_7477478	0/0	c0001	4086	94	22	23	28	7	14	copy fasta	ARHGEF18	chr19	7343937	7477478
ARHGEF18_chr19_7343937_7477478	0/0	c0002	4086	35	4	8	8	3	12	copy fasta	ARHGEF18	chr19	7343937	7477478
ARHGEF18_chr19_7343937_7477478	1/1	c0003	4086	34	2	12	14	0	4	copy fasta	ARHGEF18	chr19	7343937	7477478
ARHGEF18_chr19_7343937_7477478	0/0	c0004	4086	18	11	0	7	0	0	copy fasta	ARHGEF18	chr19	7343937	7477478
ARHGEF18_chr19_7343937_7477478	0/0	c0005	4086	11	2	0	8	0	1	copy fasta	ARHGEF18	chr19	7343937	7477478
ARHGEF18_chr19_7343937_7477478	0/0	c0006	4086	9	6	0	3	0	0	copy fasta	ARHGEF18	chr19	7343937	7477478