JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PDZD4_chrX_153797166_153835544	0/0	c0014	2329	1	0	0	1	0	0	copy fasta	PDZD4	chrX	153797166	153835544
PDZD4_chrX_153797166_153835544	0/1	c0015	2328	1	0	0	0	0	0	copy fasta	PDZD4	chrX	153797166	153835544
PDZD4_chrX_153797166_153835544	0/0	c0016	2328	1	0	0	0	0	1	copy fasta	PDZD4	chrX	153797166	153835544
PDZD4_chrX_153797166_153835544	0/0	c0017	2328	1	0	0	1	0	0	copy fasta	PDZD4	chrX	153797166	153835544
PDZD4_chrX_153797166_153835544	0/0	c0018	2329	1	1	0	0	0	0	copy fasta	PDZD4	chrX	153797166	153835544
PDZD4_chrX_153797166_153835544	0/0	c0019	2330	1	0	0	1	0	0	copy fasta	PDZD4	chrX	153797166	153835544
PDZD4_chrX_153797166_153835544	0/0	c0020	2330	1	0	0	1	0	0	copy fasta	PDZD4	chrX	153797166	153835544
PDZD7_chr10_101002679_101036129	0/0	c0001	3102	178	40	24	94	5	15	copy fasta	PDZD7	chr10	101002679	101036129
PDZD7_chr10_101002679_101036129	1/1	c0002	3102	105	16	15	58	3	11	copy fasta	PDZD7	chr10	101002679	101036129
PDZD7_chr10_101002679_101036129	0/0	c0003	3108	59	7	29	6	6	11	copy fasta	PDZD7	chr10	101002679	101036129
PDZD7_chr10_101002679_101036129	0/0	c0004	3102	9	9	0	0	0	0	copy fasta	PDZD7	chr10	101002679	101036129
PDZD7_chr10_101002679_101036129	0/0	c0005	3102	9	1	4	0	2	2	copy fasta	PDZD7	chr10	101002679	101036129
PDZD7_chr10_101002679_101036129	0/0	c0006	3102	7	0	0	7	0	0	copy fasta	PDZD7	chr10	101002679	101036129
PDZD7_chr10_101002679_101036129	0/0	c0007	3108	5	0	1	0	2	2	copy fasta	PDZD7	chr10	101002679	101036129
PDZD7_chr10_101002679_101036129	0/0	c0008	3102	5	3	2	0	0	0	copy fasta	PDZD7	chr10	101002679	101036129
PDZD7_chr10_101002679_101036129	0/0	c0009	3108	5	0	2	0	0	3	copy fasta	PDZD7	chr10	101002679	101036129
PDZD7_chr10_101002679_101036129	0/0	c0010	3102	5	1	1	2	0	1	copy fasta	PDZD7	chr10	101002679	101036129
PDZD7_chr10_101002679_101036129	0/0	c0011	3102	4	0	0	4	0	0	copy fasta	PDZD7	chr10	101002679	101036129
PDZD7_chr10_101002679_101036129	0/0	c0012	3102	3	3	0	0	0	0	copy fasta	PDZD7	chr10	101002679	101036129
PDZD7_chr10_101002679_101036129	0/0	c0013	3102	3	0	0	3	0	0	copy fasta	PDZD7	chr10	101002679	101036129
PDZD7_chr10_101002679_101036129	0/0	c0014	3108	3	0	3	0	0	0	copy fasta	PDZD7	chr10	101002679	101036129
PDZD7_chr10_101002679_101036129	0/0	c0015	3102	3	0	0	2	0	1	copy fasta	PDZD7	chr10	101002679	101036129
PDZD7_chr10_101002679_101036129	0/0	c0016	3102	2	2	0	0	0	0	copy fasta	PDZD7	chr10	101002679	101036129
PDZD7_chr10_101002679_101036129	0/0	c0017	3102	2	0	2	0	0	0	copy fasta	PDZD7	chr10	101002679	101036129
PDZD7_chr10_101002679_101036129	0/0	c0018	3102	2	1	1	0	0	0	copy fasta	PDZD7	chr10	101002679	101036129
PDZD7_chr10_101002679_101036129	0/0	c0019	3102	2	2	0	0	0	0	copy fasta	PDZD7	chr10	101002679	101036129
PDZD7_chr10_101002679_101036129	0/0	c0020	3102	1	1	0	0	0	0	copy fasta	PDZD7	chr10	101002679	101036129
PDZD7_chr10_101002679_101036129	0/0	c0021	3102	1	1	0	0	0	0	copy fasta	PDZD7	chr10	101002679	101036129
PDZD7_chr10_101002679_101036129	0/0	c0022	3102	1	0	0	1	0	0	copy fasta	PDZD7	chr10	101002679	101036129
PDZD7_chr10_101002679_101036129	0/0	c0023	3108	1	0	0	0	0	1	copy fasta	PDZD7	chr10	101002679	101036129
PDZD7_chr10_101002679_101036129	0/0	c0024	3102	1	1	0	0	0	0	copy fasta	PDZD7	chr10	101002679	101036129
PDZD7_chr10_101002679_101036129	0/0	c0025	3102	1	1	0	0	0	0	copy fasta	PDZD7	chr10	101002679	101036129
PDZD7_chr10_101002679_101036129	0/0	c0026	3102	1	1	0	0	0	0	copy fasta	PDZD7	chr10	101002679	101036129
PDZD7_chr10_101002679_101036129	0/0	c0027	3078	1	0	0	1	0	0	copy fasta	PDZD7	chr10	101002679	101036129
PDZD7_chr10_101002679_101036129	0/0	c0028	3102	1	0	0	1	0	0	copy fasta	PDZD7	chr10	101002679	101036129
PDZD7_chr10_101002679_101036129	0/0	c0029	3165	1	0	0	1	0	0	copy fasta	PDZD7	chr10	101002679	101036129
PDZD7_chr10_101002679_101036129	0/0	c0030	3102	1	0	1	0	0	0	copy fasta	PDZD7	chr10	101002679	101036129
PDZD7_chr10_101002679_101036129	0/0	c0031	3102	1	1	0	0	0	0	copy fasta	PDZD7	chr10	101002679	101036129
PDZD7_chr10_101002679_101036129	0/0	c0032	3108	1	1	0	0	0	0	copy fasta	PDZD7	chr10	101002679	101036129
PDZD7_chr10_101002679_101036129	0/0	c0033	3108	1	0	0	1	0	0	copy fasta	PDZD7	chr10	101002679	101036129
PDZD7_chr10_101002679_101036129	0/0	c0034	3108	1	0	1	0	0	0	copy fasta	PDZD7	chr10	101002679	101036129
PDZD7_chr10_101002679_101036129	0/0	c0035	3108	1	1	0	0	0	0	copy fasta	PDZD7	chr10	101002679	101036129
PDZD7_chr10_101002679_101036129	0/0	c0036	3146	1	0	0	1	0	0	copy fasta	PDZD7	chr10	101002679	101036129
PDZD7_chr10_101002679_101036129	0/0	c0037	3102	1	0	0	0	0	1	copy fasta	PDZD7	chr10	101002679	101036129
PDZD7_chr10_101002679_101036129	0/0	c0038	3102	1	0	0	0	0	1	copy fasta	PDZD7	chr10	101002679	101036129
PDZD7_chr10_101002679_101036129	0/0	c0039	3108	1	0	0	0	0	1	copy fasta	PDZD7	chr10	101002679	101036129
PDZD7_chr10_101002679_101036129	0/0	c0040	3102	1	1	0	0	0	0	copy fasta	PDZD7	chr10	101002679	101036129
PDZD8_chr10_117272274_117380440	1/1	c0001	3465	157	48	35	53	7	12	copy fasta	PDZD8	chr10	117272274	117380440
PDZD8_chr10_117272274_117380440	0/0	c0002	3465	128	29	14	74	0	11	copy fasta	PDZD8	chr10	117272274	117380440
PDZD8_chr10_117272274_117380440	0/0	c0003	3465	12	1	3	6	1	1	copy fasta	PDZD8	chr10	117272274	117380440