JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PDZD8_chr10_117272274_117380440	0/0	c0004	3465	5	5	0	0	0	0	copy fasta	PDZD8	chr10	117272274	117380440
PDZD8_chr10_117272274_117380440	0/0	c0005	3465	4	4	0	0	0	0	copy fasta	PDZD8	chr10	117272274	117380440
PDZD8_chr10_117272274_117380440	0/0	c0006	3465	3	0	1	0	0	2	copy fasta	PDZD8	chr10	117272274	117380440
PDZD8_chr10_117272274_117380440	0/0	c0007	3465	2	2	0	0	0	0	copy fasta	PDZD8	chr10	117272274	117380440
PDZD8_chr10_117272274_117380440	0/0	c0008	3465	1	0	0	1	0	0	copy fasta	PDZD8	chr10	117272274	117380440
PDZD8_chr10_117272274_117380440	0/0	c0009	3465	1	1	0	0	0	0	copy fasta	PDZD8	chr10	117272274	117380440
PDZD8_chr10_117272274_117380440	0/0	c0010	3465	1	0	1	0	0	0	copy fasta	PDZD8	chr10	117272274	117380440
PDZD8_chr10_117272274_117380440	0/0	c0011	3465	1	0	1	0	0	0	copy fasta	PDZD8	chr10	117272274	117380440
PDZD8_chr10_117272274_117380440	0/0	c0012	3465	1	1	0	0	0	0	copy fasta	PDZD8	chr10	117272274	117380440
PDZD8_chr10_117272274_117380440	0/0	c0013	3465	1	0	0	1	0	0	copy fasta	PDZD8	chr10	117272274	117380440
PDZD8_chr10_117272274_117380440	0/0	c0014	3465	1	0	1	0	0	0	copy fasta	PDZD8	chr10	117272274	117380440
PDZD8_chr10_117272274_117380440	0/0	c0015	3465	1	0	0	1	0	0	copy fasta	PDZD8	chr10	117272274	117380440
PDZD8_chr10_117272274_117380440	0/0	c0016	3465	1	0	0	1	0	0	copy fasta	PDZD8	chr10	117272274	117380440
PDZD8_chr10_117272274_117380440	0/0	c0017	3465	1	1	0	0	0	0	copy fasta	PDZD8	chr10	117272274	117380440
PDZD8_chr10_117272274_117380440	0/0	c0018	3465	1	0	0	1	0	0	copy fasta	PDZD8	chr10	117272274	117380440
PDZD9_chr16_21978865_22006116	1/1	c0001	795	362	87	49	178	10	36	copy fasta	PDZD9	chr16	21978865	22006116
PDZD9_chr16_21978865_22006116	0/0	c0002	795	2	0	0	0	2	0	copy fasta	PDZD9	chr16	21978865	22006116
PDZD9_chr16_21978865_22006116	0/0	c0003	795	1	1	0	0	0	0	copy fasta	PDZD9	chr16	21978865	22006116
PDZD9_chr16_21978865_22006116	0/0	c0004	795	1	0	1	0	0	0	copy fasta	PDZD9	chr16	21978865	22006116
PDZK1IP1_chr1_47178582_47195036	1/1	c0001	345	373	58	76	180	16	41	copy fasta	PDZK1IP1	chr1	47178582	47195036
PDZK1IP1_chr1_47178582_47195036	0/0	c0002	345	43	32	6	0	0	5	copy fasta	PDZK1IP1	chr1	47178582	47195036
PDZK1IP1_chr1_47178582_47195036	0/0	c0003	345	9	0	0	9	0	0	copy fasta	PDZK1IP1	chr1	47178582	47195036
PDZK1IP1_chr1_47178582_47195036	0/0	c0004	345	1	0	0	1	0	0	copy fasta	PDZK1IP1	chr1	47178582	47195036
PDZK1_chr1_145665985_145712368	1/0	c0001	1560	301	67	55	127	14	37	copy fasta	PDZK1	chr1	145665985	145712368
PDZK1_chr1_145665985_145712368	0/0	c0002	1560	11	11	0	0	0	0	copy fasta	PDZK1	chr1	145665985	145712368
PDZK1_chr1_145665985_145712368	0/1	c0003	1560	5	2	0	1	0	1	copy fasta	PDZK1	chr1	145665985	145712368
PDZK1_chr1_145665985_145712368	0/0	c0004	1560	1	0	0	1	0	0	copy fasta	PDZK1	chr1	145665985	145712368
PDZK1_chr1_145665985_145712368	0/0	c0005	1560	1	1	0	0	0	0	copy fasta	PDZK1	chr1	145665985	145712368
PDZK1_chr1_145665985_145712368	0/0	c0006	1560	1	0	0	1	0	0	copy fasta	PDZK1	chr1	145665985	145712368
PDZK1_chr1_145665985_145712368	0/0	c0007	1560	1	1	0	0	0	0	copy fasta	PDZK1	chr1	145665985	145712368
PDZK1_chr1_145665985_145712368	0/0	c0008	1560	1	0	1	0	0	0	copy fasta	PDZK1	chr1	145665985	145712368
PDZRN3_chr3_73377431_73629941	0/0	c0001	3201	62	23	11	18	1	9	copy fasta	PDZRN3	chr3	73377431	73629941
PDZRN3_chr3_73377431_73629941	0/0	c0002	3201	38	22	6	4	1	5	copy fasta	PDZRN3	chr3	73377431	73629941
PDZRN3_chr3_73377431_73629941	0/0	c0003	3201	34	1	11	16	2	4	copy fasta	PDZRN3	chr3	73377431	73629941
PDZRN3_chr3_73377431_73629941	0/0	c0004	3201	9	9	0	0	0	0	copy fasta	PDZRN3	chr3	73377431	73629941
PDZRN3_chr3_73377431_73629941	0/0	c0005	3201	9	9	0	0	0	0	copy fasta	PDZRN3	chr3	73377431	73629941
PDZRN3_chr3_73377431_73629941	0/0	c0006	3201	7	1	3	3	0	0	copy fasta	PDZRN3	chr3	73377431	73629941
PDZRN3_chr3_73377431_73629941	1/0	c0007	3201	7	0	3	2	0	1	copy fasta	PDZRN3	chr3	73377431	73629941
PDZRN3_chr3_73377431_73629941	0/0	c0008	3201	7	0	1	4	0	2	copy fasta	PDZRN3	chr3	73377431	73629941
PDZRN3_chr3_73377431_73629941	0/1	c0009	3201	7	5	1	0	0	0	copy fasta	PDZRN3	chr3	73377431	73629941
PDZRN3_chr3_73377431_73629941	0/0	c0010	3201	6	6	0	0	0	0	copy fasta	PDZRN3	chr3	73377431	73629941
PDZRN3_chr3_73377431_73629941	0/0	c0011	3201	4	0	2	1	1	0	copy fasta	PDZRN3	chr3	73377431	73629941
PDZRN3_chr3_73377431_73629941	0/0	c0012	3201	4	0	4	0	0	0	copy fasta	PDZRN3	chr3	73377431	73629941
PDZRN3_chr3_73377431_73629941	0/0	c0013	3201	3	3	0	0	0	0	copy fasta	PDZRN3	chr3	73377431	73629941
PDZRN3_chr3_73377431_73629941	0/0	c0014	3201	2	2	0	0	0	0	copy fasta	PDZRN3	chr3	73377431	73629941
PDZRN3_chr3_73377431_73629941	0/0	c0015	3201	2	0	2	0	0	0	copy fasta	PDZRN3	chr3	73377431	73629941
PDZRN3_chr3_73377431_73629941	0/0	c0016	3201	2	2	0	0	0	0	copy fasta	PDZRN3	chr3	73377431	73629941
PDZRN3_chr3_73377431_73629941	0/0	c0017	3201	2	2	0	0	0	0	copy fasta	PDZRN3	chr3	73377431	73629941
PDZRN3_chr3_73377431_73629941	0/0	c0018	3201	1	0	0	1	0	0	copy fasta	PDZRN3	chr3	73377431	73629941
PDZRN3_chr3_73377431_73629941	0/0	c0019	3201	1	0	0	0	0	1	copy fasta	PDZRN3	chr3	73377431	73629941