JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PDZRN3_chr3_73377431_73629941	0/0	c0020	3201	1	0	1	0	0	0	copy fasta	PDZRN3	chr3	73377431	73629941
PDZRN3_chr3_73377431_73629941	0/0	c0021	3201	1	0	0	1	0	0	copy fasta	PDZRN3	chr3	73377431	73629941
PDZRN3_chr3_73377431_73629941	0/0	c0022	3201	1	0	1	0	0	0	copy fasta	PDZRN3	chr3	73377431	73629941
PDZRN3_chr3_73377431_73629941	0/0	c0023	3201	1	0	0	0	1	0	copy fasta	PDZRN3	chr3	73377431	73629941
PDZRN3_chr3_73377431_73629941	0/0	c0024	3201	1	0	0	1	0	0	copy fasta	PDZRN3	chr3	73377431	73629941
PDZRN3_chr3_73377431_73629941	0/0	c0025	3201	1	1	0	0	0	0	copy fasta	PDZRN3	chr3	73377431	73629941
PDZRN3_chr3_73377431_73629941	0/0	c0026	3201	1	0	0	1	0	0	copy fasta	PDZRN3	chr3	73377431	73629941
PDZRN3_chr3_73377431_73629941	0/0	c0027	3201	1	1	0	0	0	0	copy fasta	PDZRN3	chr3	73377431	73629941
PDZRN3_chr3_73377431_73629941	0/0	c0028	3201	1	1	0	0	0	0	copy fasta	PDZRN3	chr3	73377431	73629941
PDZRN4_chr12_41183320_41579745	0/0	c0001	3111	29	13	4	6	2	4	copy fasta	PDZRN4	chr12	41183320	41579745
PDZRN4_chr12_41183320_41579745	0/0	c0002	3111	20	7	5	3	1	4	copy fasta	PDZRN4	chr12	41183320	41579745
PDZRN4_chr12_41183320_41579745	0/0	c0003	3111	14	3	1	8	1	1	copy fasta	PDZRN4	chr12	41183320	41579745
PDZRN4_chr12_41183320_41579745	0/0	c0004	3111	14	0	2	8	0	4	copy fasta	PDZRN4	chr12	41183320	41579745
PDZRN4_chr12_41183320_41579745	0/0	c0005	3111	11	0	1	10	0	0	copy fasta	PDZRN4	chr12	41183320	41579745
PDZRN4_chr12_41183320_41579745	0/0	c0006	3111	8	3	3	2	0	0	copy fasta	PDZRN4	chr12	41183320	41579745
PDZRN4_chr12_41183320_41579745	0/0	c0007	3111	8	0	0	8	0	0	copy fasta	PDZRN4	chr12	41183320	41579745
PDZRN4_chr12_41183320_41579745	0/0	c0008	3111	8	5	1	1	0	1	copy fasta	PDZRN4	chr12	41183320	41579745
PDZRN4_chr12_41183320_41579745	0/0	c0009	3111	8	0	0	7	1	0	copy fasta	PDZRN4	chr12	41183320	41579745
PDZRN4_chr12_41183320_41579745	0/0	c0010	3111	5	5	0	0	0	0	copy fasta	PDZRN4	chr12	41183320	41579745
PDZRN4_chr12_41183320_41579745	0/0	c0011	3111	4	0	0	4	0	0	copy fasta	PDZRN4	chr12	41183320	41579745
PDZRN4_chr12_41183320_41579745	0/0	c0012	3111	4	0	0	4	0	0	copy fasta	PDZRN4	chr12	41183320	41579745
PDZRN4_chr12_41183320_41579745	0/0	c0013	3111	4	1	2	0	0	1	copy fasta	PDZRN4	chr12	41183320	41579745
PDZRN4_chr12_41183320_41579745	0/0	c0014	3111	4	0	0	2	0	2	copy fasta	PDZRN4	chr12	41183320	41579745
PDZRN4_chr12_41183320_41579745	0/0	c0015	3111	4	1	0	1	1	1	copy fasta	PDZRN4	chr12	41183320	41579745
PDZRN4_chr12_41183320_41579745	0/0	c0016	3111	4	4	0	0	0	0	copy fasta	PDZRN4	chr12	41183320	41579745
PDZRN4_chr12_41183320_41579745	0/0	c0017	3111	3	3	0	0	0	0	copy fasta	PDZRN4	chr12	41183320	41579745
PDZRN4_chr12_41183320_41579745	0/0	c0018	3111	3	0	1	2	0	0	copy fasta	PDZRN4	chr12	41183320	41579745
PDZRN4_chr12_41183320_41579745	0/0	c0019	3111	3	0	0	3	0	0	copy fasta	PDZRN4	chr12	41183320	41579745
PDZRN4_chr12_41183320_41579745	0/0	c0020	3111	2	2	0	0	0	0	copy fasta	PDZRN4	chr12	41183320	41579745
PDZRN4_chr12_41183320_41579745	0/0	c0021	3111	2	1	1	0	0	0	copy fasta	PDZRN4	chr12	41183320	41579745
PDZRN4_chr12_41183320_41579745	0/0	c0022	3111	2	1	0	1	0	0	copy fasta	PDZRN4	chr12	41183320	41579745
PDZRN4_chr12_41183320_41579745	0/0	c0023	3111	2	0	0	2	0	0	copy fasta	PDZRN4	chr12	41183320	41579745
PDZRN4_chr12_41183320_41579745	0/0	c0024	3111	2	0	2	0	0	0	copy fasta	PDZRN4	chr12	41183320	41579745
PDZRN4_chr12_41183320_41579745	0/0	c0025	3111	1	1	0	0	0	0	copy fasta	PDZRN4	chr12	41183320	41579745
PDZRN4_chr12_41183320_41579745	0/0	c0026	3111	1	1	0	0	0	0	copy fasta	PDZRN4	chr12	41183320	41579745
PDZRN4_chr12_41183320_41579745	0/0	c0027	3111	1	1	0	0	0	0	copy fasta	PDZRN4	chr12	41183320	41579745
PDZRN4_chr12_41183320_41579745	0/0	c0028	3111	1	0	1	0	0	0	copy fasta	PDZRN4	chr12	41183320	41579745
PDZRN4_chr12_41183320_41579745	0/0	c0029	3111	1	1	0	0	0	0	copy fasta	PDZRN4	chr12	41183320	41579745
PDZRN4_chr12_41183320_41579745	0/0	c0030	3111	1	1	0	0	0	0	copy fasta	PDZRN4	chr12	41183320	41579745
PDZRN4_chr12_41183320_41579745	0/0	c0031	3111	1	1	0	0	0	0	copy fasta	PDZRN4	chr12	41183320	41579745
PDZRN4_chr12_41183320_41579745	0/0	c0032	3111	1	1	0	0	0	0	copy fasta	PDZRN4	chr12	41183320	41579745
PDZRN4_chr12_41183320_41579745	0/0	c0033	3111	1	1	0	0	0	0	copy fasta	PDZRN4	chr12	41183320	41579745
PDZRN4_chr12_41183320_41579745	0/0	c0034	3111	1	0	0	1	0	0	copy fasta	PDZRN4	chr12	41183320	41579745
PDZRN4_chr12_41183320_41579745	0/0	c0035	3111	1	1	0	0	0	0	copy fasta	PDZRN4	chr12	41183320	41579745
PDZRN4_chr12_41183320_41579745	0/0	c0036	3111	1	1	0	0	0	0	copy fasta	PDZRN4	chr12	41183320	41579745
PDZRN4_chr12_41183320_41579745	0/0	c0037	3111	1	0	1	0	0	0	copy fasta	PDZRN4	chr12	41183320	41579745
PDZRN4_chr12_41183320_41579745	0/0	c0038	3111	1	0	0	1	0	0	copy fasta	PDZRN4	chr12	41183320	41579745
PDZRN4_chr12_41183320_41579745	0/0	c0039	3111	1	1	0	0	0	0	copy fasta	PDZRN4	chr12	41183320	41579745
PDZRN4_chr12_41183320_41579745	0/0	c0040	3111	1	0	0	1	0	0	copy fasta	PDZRN4	chr12	41183320	41579745
PDZRN4_chr12_41183320_41579745	0/0	c0041	3111	1	0	0	0	0	1	copy fasta	PDZRN4	chr12	41183320	41579745