JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PDZRN4_chr12_41183320_41579745	0/0	c0042	3111	1	0	0	1	0	0	copy fasta	PDZRN4	chr12	41183320	41579745
PDZRN4_chr12_41183320_41579745	0/0	c0043	3111	1	1	0	0	0	0	copy fasta	PDZRN4	chr12	41183320	41579745
PDZRN4_chr12_41183320_41579745	0/0	c0044	3111	1	1	0	0	0	0	copy fasta	PDZRN4	chr12	41183320	41579745
PDZRN4_chr12_41183320_41579745	0/0	c0045	3111	1	0	0	1	0	0	copy fasta	PDZRN4	chr12	41183320	41579745
PDZRN4_chr12_41183320_41579745	0/0	c0046	3111	1	0	0	1	0	0	copy fasta	PDZRN4	chr12	41183320	41579745
PDZRN4_chr12_41183320_41579745	0/0	c0047	3111	1	1	0	0	0	0	copy fasta	PDZRN4	chr12	41183320	41579745
PDZRN4_chr12_41183320_41579745	0/0	c0048	3111	1	1	0	0	0	0	copy fasta	PDZRN4	chr12	41183320	41579745
PDZRN4_chr12_41183320_41579745	0/0	c0049	3111	1	0	0	1	0	0	copy fasta	PDZRN4	chr12	41183320	41579745
PDZRN4_chr12_41183320_41579745	0/0	c0050	3111	1	0	0	1	0	0	copy fasta	PDZRN4	chr12	41183320	41579745
PDZRN4_chr12_41183320_41579745	0/0	c0051	3111	1	0	0	1	0	0	copy fasta	PDZRN4	chr12	41183320	41579745
PDZRN4_chr12_41183320_41579745	0/0	c0052	3111	1	0	0	1	0	0	copy fasta	PDZRN4	chr12	41183320	41579745
PDZRN4_chr12_41183320_41579745	0/0	c0053	3111	1	1	0	0	0	0	copy fasta	PDZRN4	chr12	41183320	41579745
PDZRN4_chr12_41183320_41579745	0/0	c0054	3111	1	0	0	0	0	1	copy fasta	PDZRN4	chr12	41183320	41579745
PDZRN4_chr12_41183320_41579745	0/0	c0055	3111	1	0	0	1	0	0	copy fasta	PDZRN4	chr12	41183320	41579745
PDZRN4_chr12_41183320_41579745	0/0	c0056	3111	1	1	0	0	0	0	copy fasta	PDZRN4	chr12	41183320	41579745
PDZRN4_chr12_41183320_41579745	0/0	c0057	3111	1	1	0	0	0	0	copy fasta	PDZRN4	chr12	41183320	41579745
PDZRN4_chr12_41183320_41579745	0/0	c0058	3111	1	0	1	0	0	0	copy fasta	PDZRN4	chr12	41183320	41579745
PDZRN4_chr12_41183320_41579745	0/0	c0059	3111	1	1	0	0	0	0	copy fasta	PDZRN4	chr12	41183320	41579745
PDZRN4_chr12_41183320_41579745	0/0	c0060	3111	1	0	0	1	0	0	copy fasta	PDZRN4	chr12	41183320	41579745
PDZRN4_chr12_41183320_41579745	0/0	c0061	3111	1	1	0	0	0	0	copy fasta	PDZRN4	chr12	41183320	41579745
PDZRN4_chr12_41183320_41579745	0/0	c0062	3111	1	1	0	0	0	0	copy fasta	PDZRN4	chr12	41183320	41579745
PEA15_chr1_160200384_160220372	1/1	c0001	393	371	90	76	155	12	36	copy fasta	PEA15	chr1	160200384	160220372
PEA15_chr1_160200384_160220372	0/0	c0002	404	1	0	0	1	0	0	copy fasta	PEA15	chr1	160200384	160220372
PEAK1_chr15_77103158_77425104	1/0	c0001	5241	123	35	20	54	2	11	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	0/1	c0002	5241	86	9	23	41	2	10	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	0/0	c0003	5241	62	8	12	30	3	9	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	0/0	c0004	5241	20	5	11	2	2	0	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	0/0	c0005	5241	7	0	0	6	0	1	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	0/0	c0006	5241	5	0	0	5	0	0	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	0/0	c0007	5241	5	5	0	0	0	0	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	0/0	c0008	5241	3	0	3	0	0	0	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	0/0	c0009	5241	3	3	0	0	0	0	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	0/0	c0010	5241	2	2	0	0	0	0	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	0/0	c0011	5241	1	1	0	0	0	0	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	0/0	c0012	5241	1	1	0	0	0	0	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	0/0	c0013	5241	1	1	0	0	0	0	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	0/0	c0014	5241	1	0	0	0	1	0	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	0/0	c0015	5241	1	0	0	1	0	0	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	0/0	c0016	5241	1	0	0	0	0	1	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	0/0	c0017	5241	1	0	0	1	0	0	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	0/0	c0018	5241	1	1	0	0	0	0	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	0/0	c0019	5241	1	0	1	0	0	0	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	0/0	c0020	5241	1	1	0	0	0	0	copy fasta	PEAK1	chr15	77103158	77425104
PEAK3_chr19_2269631_2287175	1/1	c0001	1422	228	53	56	78	14	25	copy fasta	PEAK3	chr19	2269631	2287175
PEAK3_chr19_2269631_2287175	0/0	c0002	1422	105	7	16	66	1	15	copy fasta	PEAK3	chr19	2269631	2287175
PEAK3_chr19_2269631_2287175	0/0	c0003	1422	86	20	10	51	1	4	copy fasta	PEAK3	chr19	2269631	2287175
PEAK3_chr19_2269631_2287175	0/0	c0004	1422	7	7	0	0	0	0	copy fasta	PEAK3	chr19	2269631	2287175
PEAK3_chr19_2269631_2287175	0/0	c0005	1423	6	1	0	2	0	3	copy fasta	PEAK3	chr19	2269631	2287175
PEAK3_chr19_2269631_2287175	0/0	c0006	1423	3	2	1	0	0	0	copy fasta	PEAK3	chr19	2269631	2287175
PEAK3_chr19_2269631_2287175	0/0	c0007	1423	2	1	0	1	0	0	copy fasta	PEAK3	chr19	2269631	2287175