JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PEAK3_chr19_2269631_2287175	0/0	c0008	1423	2	0	0	2	0	0	copy fasta	PEAK3	chr19	2269631	2287175
PEAK3_chr19_2269631_2287175	0/0	c0009	1422	2	0	0	2	0	0	copy fasta	PEAK3	chr19	2269631	2287175
PEAK3_chr19_2269631_2287175	0/0	c0010	1422	1	1	0	0	0	0	copy fasta	PEAK3	chr19	2269631	2287175
PEAK3_chr19_2269631_2287175	0/0	c0011	1552	1	1	0	0	0	0	copy fasta	PEAK3	chr19	2269631	2287175
PEAK3_chr19_2269631_2287175	0/0	c0012	1394	1	0	0	0	0	1	copy fasta	PEAK3	chr19	2269631	2287175
PEAK3_chr19_2269631_2287175	0/0	c0013	1422	1	1	0	0	0	0	copy fasta	PEAK3	chr19	2269631	2287175
PEAK3_chr19_2269631_2287175	0/0	c0014	1422	1	0	0	0	0	1	copy fasta	PEAK3	chr19	2269631	2287175
PEAK3_chr19_2269631_2287175	0/0	c0015	1422	1	0	0	1	0	0	copy fasta	PEAK3	chr19	2269631	2287175
PEAK3_chr19_2269631_2287175	0/0	c0016	1422	1	0	1	0	0	0	copy fasta	PEAK3	chr19	2269631	2287175
PEAK3_chr19_2269631_2287175	0/0	c0017	1422	1	0	0	1	0	0	copy fasta	PEAK3	chr19	2269631	2287175
PEAK3_chr19_2269631_2287175	0/0	c0018	1422	1	0	0	1	0	0	copy fasta	PEAK3	chr19	2269631	2287175
PEAK3_chr19_2269631_2287175	0/0	c0019	1423	1	0	0	1	0	0	copy fasta	PEAK3	chr19	2269631	2287175
PEAK3_chr19_2269631_2287175	0/0	c0020	1422	1	0	0	0	0	1	copy fasta	PEAK3	chr19	2269631	2287175
PEAK3_chr19_2269631_2287175	0/0	c0021	1422	1	0	0	1	0	0	copy fasta	PEAK3	chr19	2269631	2287175
PEAK3_chr19_2269631_2287175	0/0	c0022	1422	1	0	0	1	0	0	copy fasta	PEAK3	chr19	2269631	2287175
PEAR1_chr1_156888718_156921429	0/0	c0001	3114	71	7	14	36	5	9	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	0/0	c0002	3114	65	9	10	41	1	4	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	0/1	c0003	3114	41	6	7	16	5	6	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	0/0	c0004	3114	35	7	8	10	0	10	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	0/0	c0005	3114	22	12	3	1	0	6	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	0/0	c0006	3114	14	1	4	9	0	0	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	0/0	c0007	3114	10	0	0	10	0	0	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	0/0	c0008	3114	8	2	0	6	0	0	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	0/0	c0009	3114	8	8	0	0	0	0	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	0/0	c0010	3114	7	0	0	7	0	0	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	0/0	c0011	3114	7	5	0	2	0	0	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	0/0	c0012	3114	7	0	3	1	1	2	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	0/0	c0013	3114	6	5	1	0	0	0	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	0/0	c0014	3114	6	0	0	6	0	0	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	0/0	c0015	3114	5	0	3	0	0	2	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	0/0	c0016	3114	5	0	0	5	0	0	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	0/0	c0017	3099	5	5	0	0	0	0	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	0/0	c0018	3114	4	1	0	3	0	0	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	0/0	c0019	3114	4	3	1	0	0	0	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	0/0	c0020	3114	3	2	0	0	0	1	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	0/0	c0021	3114	3	0	0	0	0	3	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	0/0	c0022	3099	3	3	0	0	0	0	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	0/0	c0023	3114	2	0	0	2	0	0	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	0/0	c0024	3114	2	2	0	0	0	0	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	0/0	c0025	3114	2	0	0	2	0	0	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	0/0	c0026	3114	2	0	1	0	1	0	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	0/0	c0027	3114	2	2	0	0	0	0	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	0/0	c0028	3114	2	0	0	2	0	0	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	0/0	c0029	3114	2	2	0	0	0	0	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	0/0	c0030	3114	2	0	1	0	0	1	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	0/0	c0031	3114	2	2	0	0	0	0	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	0/0	c0032	3114	2	2	0	0	0	0	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	0/0	c0033	3114	1	1	0	0	0	0	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	0/0	c0034	3114	1	0	0	1	0	0	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	0/0	c0035	3114	1	0	0	1	0	0	copy fasta	PEAR1	chr1	156888718	156921429