JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PEAR1_chr1_156888718_156921429	0/0	c0036	3114	1	0	0	0	1	0	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	0/0	c0037	3114	1	0	0	0	0	1	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	0/0	c0038	3114	1	0	0	1	0	0	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	0/0	c0039	3114	1	0	1	0	0	0	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	0/0	c0040	3114	1	1	0	0	0	0	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	0/0	c0041	3114	1	0	0	1	0	0	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	0/0	c0042	3114	1	0	0	0	1	0	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	0/0	c0043	3114	1	0	1	0	0	0	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	0/0	c0044	3114	1	1	0	0	0	0	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	0/0	c0045	3114	1	1	0	0	0	0	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	0/0	c0046	3114	1	1	0	0	0	0	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	0/0	c0047	3114	1	0	0	0	0	1	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	0/0	c0048	3114	1	1	0	0	0	0	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	0/0	c0049	3099	1	1	0	0	0	0	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	0/0	c0050	3114	1	0	0	1	0	0	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	0/0	c0051	3114	1	0	0	0	1	0	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	0/0	c0052	3114	1	0	0	1	0	0	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	0/0	c0053	3114	1	1	0	0	0	0	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	0/0	c0054	3114	1	0	0	1	0	0	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	0/0	c0055	3173	1	1	0	0	0	0	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	0/0	c0056	3114	1	1	0	0	0	0	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	1/0	c0057	3114	1	0	0	0	0	0	copy fasta	PEAR1	chr1	156888718	156921429
PEBP1_chr12_118131124_118150584	1/1	c0001	564	424	92	70	207	16	37	copy fasta	PEBP1	chr12	118131124	118150584
PEBP1_chr12_118131124_118150584	0/0	c0002	564	1	0	0	0	0	1	copy fasta	PEBP1	chr12	118131124	118150584
PEBP1_chr12_118131124_118150584	0/0	c0003	564	1	0	0	1	0	0	copy fasta	PEBP1	chr12	118131124	118150584
PEBP4_chr8_22708251_22932914	1/0	c0001	684	91	7	18	41	11	13	copy fasta	PEBP4	chr8	22708251	22932914
PEBP4_chr8_22708251_22932914	0/1	c0002	684	58	23	11	17	1	5	copy fasta	PEBP4	chr8	22708251	22932914
PEBP4_chr8_22708251_22932914	0/0	c0003	683	25	14	6	2	2	1	copy fasta	PEBP4	chr8	22708251	22932914
PEBP4_chr8_22708251_22932914	0/0	c0004	683	22	0	5	12	3	2	copy fasta	PEBP4	chr8	22708251	22932914
PEBP4_chr8_22708251_22932914	0/0	c0005	684	15	1	3	8	0	3	copy fasta	PEBP4	chr8	22708251	22932914
PEBP4_chr8_22708251_22932914	0/0	c0006	684	11	10	1	0	0	0	copy fasta	PEBP4	chr8	22708251	22932914
PEBP4_chr8_22708251_22932914	0/0	c0007	683	9	7	2	0	0	0	copy fasta	PEBP4	chr8	22708251	22932914
PEBP4_chr8_22708251_22932914	0/0	c0008	683	6	0	0	6	0	0	copy fasta	PEBP4	chr8	22708251	22932914
PEBP4_chr8_22708251_22932914	0/0	c0009	684	5	4	1	0	0	0	copy fasta	PEBP4	chr8	22708251	22932914
PEBP4_chr8_22708251_22932914	0/0	c0010	683	4	0	2	2	0	0	copy fasta	PEBP4	chr8	22708251	22932914
PEBP4_chr8_22708251_22932914	0/0	c0011	683	4	0	3	0	1	0	copy fasta	PEBP4	chr8	22708251	22932914
PEBP4_chr8_22708251_22932914	0/0	c0012	684	3	3	0	0	0	0	copy fasta	PEBP4	chr8	22708251	22932914
PEBP4_chr8_22708251_22932914	0/0	c0013	683	2	2	0	0	0	0	copy fasta	PEBP4	chr8	22708251	22932914
PEBP4_chr8_22708251_22932914	0/0	c0014	684	2	0	0	2	0	0	copy fasta	PEBP4	chr8	22708251	22932914
PEBP4_chr8_22708251_22932914	0/0	c0015	684	2	0	0	0	0	2	copy fasta	PEBP4	chr8	22708251	22932914
PEBP4_chr8_22708251_22932914	0/0	c0016	684	2	0	0	2	0	0	copy fasta	PEBP4	chr8	22708251	22932914
PEBP4_chr8_22708251_22932914	0/0	c0017	683	1	0	1	0	0	0	copy fasta	PEBP4	chr8	22708251	22932914
PEBP4_chr8_22708251_22932914	0/0	c0018	684	1	0	0	1	0	0	copy fasta	PEBP4	chr8	22708251	22932914
PEBP4_chr8_22708251_22932914	0/0	c0019	684	1	1	0	0	0	0	copy fasta	PEBP4	chr8	22708251	22932914
PEBP4_chr8_22708251_22932914	0/0	c0020	684	1	1	0	0	0	0	copy fasta	PEBP4	chr8	22708251	22932914
PEBP4_chr8_22708251_22932914	0/0	c0021	684	1	1	0	0	0	0	copy fasta	PEBP4	chr8	22708251	22932914
PEBP4_chr8_22708251_22932914	0/0	c0022	684	1	0	1	0	0	0	copy fasta	PEBP4	chr8	22708251	22932914
PEBP4_chr8_22708251_22932914	0/0	c0023	684	1	1	0	0	0	0	copy fasta	PEBP4	chr8	22708251	22932914
PEBP4_chr8_22708251_22932914	0/0	c0024	683	1	1	0	0	0	0	copy fasta	PEBP4	chr8	22708251	22932914
PEBP4_chr8_22708251_22932914	0/0	c0025	684	1	1	0	0	0	0	copy fasta	PEBP4	chr8	22708251	22932914