JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PEBP4_chr8_22708251_22932914	0/0	c0026	684	1	1	0	0	0	0	copy fasta	PEBP4	chr8	22708251	22932914
PEBP4_chr8_22708251_22932914	0/0	c0027	684	1	0	0	1	0	0	copy fasta	PEBP4	chr8	22708251	22932914
PEBP4_chr8_22708251_22932914	0/0	c0028	683	1	0	1	0	0	0	copy fasta	PEBP4	chr8	22708251	22932914
PEBP4_chr8_22708251_22932914	0/0	c0029	683	1	0	1	0	0	0	copy fasta	PEBP4	chr8	22708251	22932914
PEBP4_chr8_22708251_22932914	0/0	c0030	684	1	0	0	1	0	0	copy fasta	PEBP4	chr8	22708251	22932914
PEBP4_chr8_22708251_22932914	0/0	c0031	684	1	0	0	1	0	0	copy fasta	PEBP4	chr8	22708251	22932914
PEBP4_chr8_22708251_22932914	0/0	c0032	684	1	1	0	0	0	0	copy fasta	PEBP4	chr8	22708251	22932914
PEBP4_chr8_22708251_22932914	0/0	c0033	683	1	1	0	0	0	0	copy fasta	PEBP4	chr8	22708251	22932914
PECAM1_chr17_64314415_64395860	0/0	c0001	2217	106	15	30	36	4	21	copy fasta	PECAM1	chr17	64314415	64395860
PECAM1_chr17_64314415_64395860	0/1	c0002	2217	98	13	25	39	5	15	copy fasta	PECAM1	chr17	64314415	64395860
PECAM1_chr17_64314415_64395860	1/0	c0003	2217	32	25	6	0	0	0	copy fasta	PECAM1	chr17	64314415	64395860
PECAM1_chr17_64314415_64395860	0/0	c0004	2217	11	11	0	0	0	0	copy fasta	PECAM1	chr17	64314415	64395860
PECAM1_chr17_64314415_64395860	0/0	c0005	2217	8	8	0	0	0	0	copy fasta	PECAM1	chr17	64314415	64395860
PECAM1_chr17_64314415_64395860	0/0	c0006	2217	6	6	0	0	0	0	copy fasta	PECAM1	chr17	64314415	64395860
PECAM1_chr17_64314415_64395860	0/0	c0007	2217	6	5	1	0	0	0	copy fasta	PECAM1	chr17	64314415	64395860
PECAM1_chr17_64314415_64395860	0/0	c0008	2217	5	4	1	0	0	0	copy fasta	PECAM1	chr17	64314415	64395860
PECAM1_chr17_64314415_64395860	0/0	c0009	2217	4	1	0	2	1	0	copy fasta	PECAM1	chr17	64314415	64395860
PECAM1_chr17_64314415_64395860	0/0	c0010	2217	2	0	0	2	0	0	copy fasta	PECAM1	chr17	64314415	64395860
PECAM1_chr17_64314415_64395860	0/0	c0011	2217	2	0	0	0	0	2	copy fasta	PECAM1	chr17	64314415	64395860
PECAM1_chr17_64314415_64395860	0/0	c0012	2217	1	0	0	0	0	1	copy fasta	PECAM1	chr17	64314415	64395860
PECAM1_chr17_64314415_64395860	0/0	c0013	2217	1	1	0	0	0	0	copy fasta	PECAM1	chr17	64314415	64395860
PECAM1_chr17_64314415_64395860	0/0	c0014	2217	1	1	0	0	0	0	copy fasta	PECAM1	chr17	64314415	64395860
PECAM1_chr17_64314415_64395860	0/0	c0015	2217	1	0	1	0	0	0	copy fasta	PECAM1	chr17	64314415	64395860
PECAM1_chr17_64314415_64395860	0/0	c0016	2217	1	0	0	0	0	1	copy fasta	PECAM1	chr17	64314415	64395860
PECAM1_chr17_64314415_64395860	0/0	c0017	2217	1	0	0	1	0	0	copy fasta	PECAM1	chr17	64314415	64395860
PECAM1_chr17_64314415_64395860	0/0	c0018	2217	1	1	0	0	0	0	copy fasta	PECAM1	chr17	64314415	64395860
PECAM1_chr17_64314415_64395860	0/0	c0019	2217	1	1	0	0	0	0	copy fasta	PECAM1	chr17	64314415	64395860
PECR_chr2_216033388_216086809	1/1	c0001	912	254	64	54	105	12	17	copy fasta	PECR	chr2	216033388	216086809
PECR_chr2_216033388_216086809	0/0	c0002	912	86	20	10	43	0	13	copy fasta	PECR	chr2	216033388	216086809
PECR_chr2_216033388_216086809	0/0	c0003	912	39	3	10	16	3	7	copy fasta	PECR	chr2	216033388	216086809
PECR_chr2_216033388_216086809	0/0	c0004	912	3	3	0	0	0	0	copy fasta	PECR	chr2	216033388	216086809
PECR_chr2_216033388_216086809	0/0	c0005	912	2	2	0	0	0	0	copy fasta	PECR	chr2	216033388	216086809
PECR_chr2_216033388_216086809	0/0	c0006	912	2	0	1	0	0	1	copy fasta	PECR	chr2	216033388	216086809
PECR_chr2_216033388_216086809	0/0	c0007	912	2	2	0	0	0	0	copy fasta	PECR	chr2	216033388	216086809
PECR_chr2_216033388_216086809	0/0	c0008	912	2	1	0	0	0	1	copy fasta	PECR	chr2	216033388	216086809
PECR_chr2_216033388_216086809	0/0	c0009	912	2	2	0	0	0	0	copy fasta	PECR	chr2	216033388	216086809
PECR_chr2_216033388_216086809	0/0	c0010	912	1	0	1	0	0	0	copy fasta	PECR	chr2	216033388	216086809
PECR_chr2_216033388_216086809	0/0	c0011	912	1	1	0	0	0	0	copy fasta	PECR	chr2	216033388	216086809
PECR_chr2_216033388_216086809	0/0	c0012	912	1	0	0	0	1	0	copy fasta	PECR	chr2	216033388	216086809
PECR_chr2_216033388_216086809	0/0	c0013	912	1	0	0	1	0	0	copy fasta	PECR	chr2	216033388	216086809
PECR_chr2_216033388_216086809	0/0	c0014	912	1	0	0	1	0	0	copy fasta	PECR	chr2	216033388	216086809
PECR_chr2_216033388_216086809	0/0	c0015	912	1	0	0	0	0	1	copy fasta	PECR	chr2	216033388	216086809
PEDS1_chr20_50113254_50158723	0/0	c0001	813	219	27	46	112	8	26	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/1	c0002	813	101	22	17	40	6	15	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	c0003	813	43	33	5	4	0	1	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	1/0	c0004	813	1	0	0	0	0	0	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	c0005	813	1	1	0	0	0	0	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	c0006	813	1	1	0	0	0	0	copy fasta	PEDS1	chr20	50113254	50158723
PEF1_chr1_31624866_31649876	1/0	c0001	855	226	70	38	87	7	23	copy fasta	PEF1	chr1	31624866	31649876
PEF1_chr1_31624866_31649876	0/1	c0002	855	118	6	28	59	5	19	copy fasta	PEF1	chr1	31624866	31649876