JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PEF1_chr1_31624866_31649876	0/0	c0003	855	1	1	0	0	0	0	copy fasta	PEF1	chr1	31624866	31649876
PEF1_chr1_31624866_31649876	0/0	c0004	855	1	1	0	0	0	0	copy fasta	PEF1	chr1	31624866	31649876
PEG3_chr19_56805082_56845726	1/0	c0001	4767	104	39	17	33	3	11	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	c0002	4767	79	4	15	45	4	11	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/1	c0003	4767	63	2	13	31	2	14	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	c0004	4767	50	9	11	20	3	7	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	c0005	4767	27	0	0	27	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	c0006	4767	7	0	0	7	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	c0007	4767	6	5	1	0	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	c0008	4767	5	0	0	5	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	c0009	4767	5	1	4	0	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	c0010	4767	4	0	0	4	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	c0011	4767	4	4	0	0	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	c0012	4767	4	4	0	0	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	c0013	4767	4	0	4	0	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	c0014	4767	4	3	1	0	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	c0015	4767	3	3	0	0	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	c0016	4767	3	0	0	0	3	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	c0017	4767	3	2	1	0	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	c0018	4767	2	0	2	0	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	c0019	4788	2	0	0	0	0	2	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	c0020	4767	2	2	0	0	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	c0021	4767	2	0	2	0	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	c0022	4767	2	2	0	0	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	c0023	4767	2	2	0	0	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	c0024	4767	2	0	0	2	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	c0025	4767	1	0	1	0	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	c0026	4767	1	0	0	1	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	c0027	4767	1	0	0	1	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	c0028	4767	1	0	0	1	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	c0029	4767	1	0	0	0	1	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	c0030	4767	1	1	0	0	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	c0031	4767	1	0	0	1	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	c0032	4767	1	1	0	0	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	c0033	4767	1	0	0	1	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	c0034	4767	1	1	0	0	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	c0035	4767	1	1	0	0	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	c0036	4767	1	0	1	0	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	c0037	4767	1	1	0	0	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	c0038	4767	1	1	0	0	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	c0039	4767	1	0	0	1	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	c0040	4767	1	0	1	0	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	c0041	4767	1	1	0	0	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	c0042	4767	1	1	0	0	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	c0043	4767	1	1	0	0	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	c0044	4767	1	1	0	0	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	c0045	4767	1	0	0	0	0	1	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	c0046	4767	1	0	0	1	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	c0047	4767	1	0	1	0	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	c0048	4767	1	0	0	1	0	0	copy fasta	PEG3	chr19	56805082	56845726