JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PEG3_chr19_56805082_56845726	0/0	c0049	4767	1	0	0	1	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	c0050	4767	1	0	1	0	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	c0051	4767	1	0	0	1	0	0	copy fasta	PEG3	chr19	56805082	56845726
PELI1_chr2_64087652_64149420	1/1	c0001	1257	207	76	46	55	3	25	copy fasta	PELI1	chr2	64087652	64149420
PELI1_chr2_64087652_64149420	0/0	c0002	1257	85	4	16	50	5	10	copy fasta	PELI1	chr2	64087652	64149420
PELI1_chr2_64087652_64149420	0/0	c0003	1257	5	1	0	0	0	4	copy fasta	PELI1	chr2	64087652	64149420
PELI1_chr2_64087652_64149420	0/0	c0004	1257	2	2	0	0	0	0	copy fasta	PELI1	chr2	64087652	64149420
PELI1_chr2_64087652_64149420	0/0	c0005	1257	2	0	0	0	0	2	copy fasta	PELI1	chr2	64087652	64149420
PELI1_chr2_64087652_64149420	0/0	c0006	1257	1	1	0	0	0	0	copy fasta	PELI1	chr2	64087652	64149420
PELI1_chr2_64087652_64149420	0/0	c0007	1257	1	0	0	1	0	0	copy fasta	PELI1	chr2	64087652	64149420
PELI1_chr2_64087652_64149420	0/0	c0008	1257	1	0	0	0	0	1	copy fasta	PELI1	chr2	64087652	64149420
PELI2_chr14_56113411_56306524	1/1	c0001	1263	350	75	62	154	18	39	copy fasta	PELI2	chr14	56113411	56306524
PELI2_chr14_56113411_56306524	0/0	c0002	1263	7	7	0	0	0	0	copy fasta	PELI2	chr14	56113411	56306524
PELI2_chr14_56113411_56306524	0/0	c0003	1263	4	0	0	4	0	0	copy fasta	PELI2	chr14	56113411	56306524
PELI2_chr14_56113411_56306524	0/0	c0004	1263	2	0	2	0	0	0	copy fasta	PELI2	chr14	56113411	56306524
PELI2_chr14_56113411_56306524	0/0	c0005	1263	1	0	0	1	0	0	copy fasta	PELI2	chr14	56113411	56306524
PELI2_chr14_56113411_56306524	0/0	c0006	1263	1	0	0	1	0	0	copy fasta	PELI2	chr14	56113411	56306524
PELI2_chr14_56113411_56306524	0/0	c0007	1263	1	1	0	0	0	0	copy fasta	PELI2	chr14	56113411	56306524
PELI2_chr14_56113411_56306524	0/0	c0008	1263	1	1	0	0	0	0	copy fasta	PELI2	chr14	56113411	56306524
PELI2_chr14_56113411_56306524	0/0	c0009	1263	1	0	0	0	0	1	copy fasta	PELI2	chr14	56113411	56306524
PELI3_chr11_66461905_66482337	1/1	c0001	1410	264	61	55	112	11	23	copy fasta	PELI3	chr11	66461905	66482337
PELI3_chr11_66461905_66482337	0/0	c0002	1410	125	28	20	65	3	9	copy fasta	PELI3	chr11	66461905	66482337
PELI3_chr11_66461905_66482337	0/0	c0003	1410	1	1	0	0	0	0	copy fasta	PELI3	chr11	66461905	66482337
PELI3_chr11_66461905_66482337	0/0	c0004	1436	1	0	0	1	0	0	copy fasta	PELI3	chr11	66461905	66482337
PELI3_chr11_66461905_66482337	0/0	c0005	1410	1	1	0	0	0	0	copy fasta	PELI3	chr11	66461905	66482337
PELI3_chr11_66461905_66482337	0/0	c0006	1410	1	1	0	0	0	0	copy fasta	PELI3	chr11	66461905	66482337
PELI3_chr11_66461905_66482337	0/0	c0007	1410	1	1	0	0	0	0	copy fasta	PELI3	chr11	66461905	66482337
PELI3_chr11_66461905_66482337	0/0	c0008	1410	1	1	0	0	0	0	copy fasta	PELI3	chr11	66461905	66482337
PELI3_chr11_66461905_66482337	0/0	c0009	1410	1	0	1	0	0	0	copy fasta	PELI3	chr11	66461905	66482337
PELO_chr5_52782916_52809044	0/1	c0001	1158	379	78	63	180	16	41	copy fasta	PELO	chr5	52782916	52809044
PELO_chr5_52782916_52809044	1/0	c0002	1158	54	13	6	29	1	4	copy fasta	PELO	chr5	52782916	52809044
PELO_chr5_52782916_52809044	0/0	c0003	1158	1	1	0	0	0	0	copy fasta	PELO	chr5	52782916	52809044
PELO_chr5_52782916_52809044	0/0	c0004	1158	1	0	1	0	0	0	copy fasta	PELO	chr5	52782916	52809044
PELO_chr5_52782916_52809044	0/0	c0005	1158	1	0	0	1	0	0	copy fasta	PELO	chr5	52782916	52809044
PELO_chr5_52782916_52809044	0/0	c0006	1158	1	0	0	1	0	0	copy fasta	PELO	chr5	52782916	52809044
PELO_chr5_52782916_52809044	0/0	c0007	1158	1	1	0	0	0	0	copy fasta	PELO	chr5	52782916	52809044
PELO_chr5_52782916_52809044	0/0	c0008	1158	1	0	0	1	0	0	copy fasta	PELO	chr5	52782916	52809044
PELO_chr5_52782916_52809044	0/0	c0009	1158	1	0	0	0	1	0	copy fasta	PELO	chr5	52782916	52809044
PELO_chr5_52782916_52809044	0/0	c0010	1158	1	1	0	0	0	0	copy fasta	PELO	chr5	52782916	52809044
PELO_chr5_52782916_52809044	0/0	c0011	1158	1	0	0	0	0	1	copy fasta	PELO	chr5	52782916	52809044
PELP1_chr17_4664774_4709137	0/1	c0001	3393	201	36	39	100	3	22	copy fasta	PELP1	chr17	4664774	4709137
PELP1_chr17_4664774_4709137	1/0	c0002	3393	33	31	1	0	0	0	copy fasta	PELP1	chr17	4664774	4709137
PELP1_chr17_4664774_4709137	0/0	c0003	3393	14	1	4	1	3	5	copy fasta	PELP1	chr17	4664774	4709137
PELP1_chr17_4664774_4709137	0/0	c0004	3393	10	2	6	0	1	1	copy fasta	PELP1	chr17	4664774	4709137
PELP1_chr17_4664774_4709137	0/0	c0005	3381	9	0	0	9	0	0	copy fasta	PELP1	chr17	4664774	4709137
PELP1_chr17_4664774_4709137	0/0	c0006	3393	5	2	2	0	0	1	copy fasta	PELP1	chr17	4664774	4709137
PELP1_chr17_4664774_4709137	0/0	c0007	3393	5	5	0	0	0	0	copy fasta	PELP1	chr17	4664774	4709137
PELP1_chr17_4664774_4709137	0/0	c0008	3393	3	3	0	0	0	0	copy fasta	PELP1	chr17	4664774	4709137
PELP1_chr17_4664774_4709137	0/0	c0009	3390	3	3	0	0	0	0	copy fasta	PELP1	chr17	4664774	4709137
PELP1_chr17_4664774_4709137	0/0	c0010	3393	3	0	0	0	0	3	copy fasta	PELP1	chr17	4664774	4709137