JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PELP1_chr17_4664774_4709137	0/0	c0011	3393	3	0	0	3	0	0	copy fasta	PELP1	chr17	4664774	4709137
PELP1_chr17_4664774_4709137	0/0	c0012	3393	2	0	0	0	0	2	copy fasta	PELP1	chr17	4664774	4709137
PELP1_chr17_4664774_4709137	0/0	c0013	3393	2	2	0	0	0	0	copy fasta	PELP1	chr17	4664774	4709137
PELP1_chr17_4664774_4709137	0/0	c0014	3393	2	0	0	0	0	2	copy fasta	PELP1	chr17	4664774	4709137
PELP1_chr17_4664774_4709137	0/0	c0015	3393	2	0	1	0	1	0	copy fasta	PELP1	chr17	4664774	4709137
PELP1_chr17_4664774_4709137	0/0	c0016	3393	2	0	0	0	0	2	copy fasta	PELP1	chr17	4664774	4709137
PELP1_chr17_4664774_4709137	0/0	c0017	3390	1	1	0	0	0	0	copy fasta	PELP1	chr17	4664774	4709137
PELP1_chr17_4664774_4709137	0/0	c0018	3390	1	1	0	0	0	0	copy fasta	PELP1	chr17	4664774	4709137
PELP1_chr17_4664774_4709137	0/0	c0019	3393	1	0	0	1	0	0	copy fasta	PELP1	chr17	4664774	4709137
PELP1_chr17_4664774_4709137	0/0	c0020	3393	1	0	0	0	0	1	copy fasta	PELP1	chr17	4664774	4709137
PELP1_chr17_4664774_4709137	0/0	c0021	3393	1	0	1	0	0	0	copy fasta	PELP1	chr17	4664774	4709137
PELP1_chr17_4664774_4709137	0/0	c0022	3393	1	0	1	0	0	0	copy fasta	PELP1	chr17	4664774	4709137
PELP1_chr17_4664774_4709137	0/0	c0023	3393	1	1	0	0	0	0	copy fasta	PELP1	chr17	4664774	4709137
PELP1_chr17_4664774_4709137	0/0	c0024	3393	1	1	0	0	0	0	copy fasta	PELP1	chr17	4664774	4709137
PELP1_chr17_4664774_4709137	0/0	c0025	3393	1	1	0	0	0	0	copy fasta	PELP1	chr17	4664774	4709137
PELP1_chr17_4664774_4709137	0/0	c0026	3393	1	1	0	0	0	0	copy fasta	PELP1	chr17	4664774	4709137
PELP1_chr17_4664774_4709137	0/0	c0027	3393	1	0	0	1	0	0	copy fasta	PELP1	chr17	4664774	4709137
PELP1_chr17_4664774_4709137	0/0	c0028	3393	1	0	0	0	0	1	copy fasta	PELP1	chr17	4664774	4709137
PELP1_chr17_4664774_4709137	0/0	c0029	3393	1	1	0	0	0	0	copy fasta	PELP1	chr17	4664774	4709137
PELP1_chr17_4664774_4709137	0/0	c0030	3393	1	0	1	0	0	0	copy fasta	PELP1	chr17	4664774	4709137
PELP1_chr17_4664774_4709137	0/0	c0031	3393	1	0	1	0	0	0	copy fasta	PELP1	chr17	4664774	4709137
PELP1_chr17_4664774_4709137	0/0	c0032	3393	1	0	0	1	0	0	copy fasta	PELP1	chr17	4664774	4709137
PELP1_chr17_4664774_4709137	0/0	c0033	3393	1	0	1	0	0	0	copy fasta	PELP1	chr17	4664774	4709137
PEMT_chr17_17500563_17596708	1/0	c0001	711	194	57	23	93	2	18	copy fasta	PEMT	chr17	17500563	17596708
PEMT_chr17_17500563_17596708	0/1	c0002	711	71	18	22	14	6	10	copy fasta	PEMT	chr17	17500563	17596708
PEMT_chr17_17500563_17596708	0/0	c0003	711	51	6	20	16	6	3	copy fasta	PEMT	chr17	17500563	17596708
PEMT_chr17_17500563_17596708	0/0	c0004	711	8	0	2	2	1	3	copy fasta	PEMT	chr17	17500563	17596708
PEMT_chr17_17500563_17596708	0/0	c0005	711	8	4	0	1	0	3	copy fasta	PEMT	chr17	17500563	17596708
PEMT_chr17_17500563_17596708	0/0	c0006	711	7	7	0	0	0	0	copy fasta	PEMT	chr17	17500563	17596708
PEMT_chr17_17500563_17596708	0/0	c0007	711	2	0	1	0	1	0	copy fasta	PEMT	chr17	17500563	17596708
PEMT_chr17_17500563_17596708	0/0	c0008	711	1	1	0	0	0	0	copy fasta	PEMT	chr17	17500563	17596708
PEMT_chr17_17500563_17596708	0/0	c0009	711	1	0	0	1	0	0	copy fasta	PEMT	chr17	17500563	17596708
PEMT_chr17_17500563_17596708	0/0	c0010	711	1	0	0	0	0	1	copy fasta	PEMT	chr17	17500563	17596708
PEMT_chr17_17500563_17596708	0/0	c0011	711	1	0	1	0	0	0	copy fasta	PEMT	chr17	17500563	17596708
PEMT_chr17_17500563_17596708	0/0	c0012	711	1	0	0	1	0	0	copy fasta	PEMT	chr17	17500563	17596708
PEMT_chr17_17500563_17596708	0/0	c0013	711	1	0	1	0	0	0	copy fasta	PEMT	chr17	17500563	17596708
PEMT_chr17_17500563_17596708	0/0	c0014	711	1	1	0	0	0	0	copy fasta	PEMT	chr17	17500563	17596708
PENK_chr8_56435957_56451641	1/1	c0001	804	320	47	67	152	12	40	copy fasta	PENK	chr8	56435957	56451641
PENK_chr8_56435957_56451641	0/0	c0002	804	85	29	5	50	0	1	copy fasta	PENK	chr8	56435957	56451641
PENK_chr8_56435957_56451641	0/0	c0003	804	9	8	1	0	0	0	copy fasta	PENK	chr8	56435957	56451641
PENK_chr8_56435957_56451641	0/0	c0004	804	5	5	0	0	0	0	copy fasta	PENK	chr8	56435957	56451641
PENK_chr8_56435957_56451641	0/0	c0005	783	4	3	1	0	0	0	copy fasta	PENK	chr8	56435957	56451641
PENK_chr8_56435957_56451641	0/0	c0006	804	3	0	0	0	0	3	copy fasta	PENK	chr8	56435957	56451641
PENK_chr8_56435957_56451641	0/0	c0007	804	2	1	1	0	0	0	copy fasta	PENK	chr8	56435957	56451641
PENK_chr8_56435957_56451641	0/0	c0008	804	1	0	0	1	0	0	copy fasta	PENK	chr8	56435957	56451641
PENK_chr8_56435957_56451641	0/0	c0009	804	1	0	0	1	0	0	copy fasta	PENK	chr8	56435957	56451641
PENK_chr8_56435957_56451641	0/0	c0010	804	1	1	0	0	0	0	copy fasta	PENK	chr8	56435957	56451641
PENK_chr8_56435957_56451641	0/0	c0011	804	1	0	0	1	0	0	copy fasta	PENK	chr8	56435957	56451641
PENK_chr8_56435957_56451641	0/0	c0012	804	1	1	0	0	0	0	copy fasta	PENK	chr8	56435957	56451641
PENK_chr8_56435957_56451641	0/0	c0013	804	1	0	1	0	0	0	copy fasta	PENK	chr8	56435957	56451641