JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PENK_chr8_56435957_56451641	0/0	c0014	804	1	1	0	0	0	0	copy fasta	PENK	chr8	56435957	56451641
PENK_chr8_56435957_56451641	0/0	c0015	783	1	0	0	1	0	0	copy fasta	PENK	chr8	56435957	56451641
PEPD_chr19_33381950_33526791	1/1	c0001	1482	163	40	43	49	9	20	copy fasta	PEPD	chr19	33381950	33526791
PEPD_chr19_33381950_33526791	0/0	c0002	1482	74	29	14	22	5	4	copy fasta	PEPD	chr19	33381950	33526791
PEPD_chr19_33381950_33526791	0/0	c0003	1482	43	2	3	34	1	3	copy fasta	PEPD	chr19	33381950	33526791
PEPD_chr19_33381950_33526791	0/0	c0004	1482	7	0	0	7	0	0	copy fasta	PEPD	chr19	33381950	33526791
PEPD_chr19_33381950_33526791	0/0	c0005	1482	6	0	0	5	0	1	copy fasta	PEPD	chr19	33381950	33526791
PEPD_chr19_33381950_33526791	0/0	c0006	1482	6	6	0	0	0	0	copy fasta	PEPD	chr19	33381950	33526791
PEPD_chr19_33381950_33526791	0/0	c0007	1482	4	0	1	3	0	0	copy fasta	PEPD	chr19	33381950	33526791
PEPD_chr19_33381950_33526791	0/0	c0008	1482	3	0	0	3	0	0	copy fasta	PEPD	chr19	33381950	33526791
PEPD_chr19_33381950_33526791	0/0	c0009	1482	2	1	0	0	1	0	copy fasta	PEPD	chr19	33381950	33526791
PEPD_chr19_33381950_33526791	0/0	c0010	1482	2	2	0	0	0	0	copy fasta	PEPD	chr19	33381950	33526791
PEPD_chr19_33381950_33526791	0/0	c0011	1482	1	1	0	0	0	0	copy fasta	PEPD	chr19	33381950	33526791
PEPD_chr19_33381950_33526791	0/0	c0012	1482	1	0	0	1	0	0	copy fasta	PEPD	chr19	33381950	33526791
PEPD_chr19_33381950_33526791	0/0	c0013	1482	1	0	1	0	0	0	copy fasta	PEPD	chr19	33381950	33526791
PEPD_chr19_33381950_33526791	0/0	c0014	1482	1	1	0	0	0	0	copy fasta	PEPD	chr19	33381950	33526791
PER1_chr17_8135472_8157404	0/1	c0001	3873	119	14	25	49	8	22	copy fasta	PER1	chr17	8135472	8157404
PER1_chr17_8135472_8157404	1/0	c0002	3873	114	21	13	76	0	3	copy fasta	PER1	chr17	8135472	8157404
PER1_chr17_8135472_8157404	0/0	c0003	3873	77	2	21	45	0	9	copy fasta	PER1	chr17	8135472	8157404
PER1_chr17_8135472_8157404	0/0	c0004	3873	41	16	12	6	4	3	copy fasta	PER1	chr17	8135472	8157404
PER1_chr17_8135472_8157404	0/0	c0005	3873	16	10	1	5	0	0	copy fasta	PER1	chr17	8135472	8157404
PER1_chr17_8135472_8157404	0/0	c0006	3873	8	8	0	0	0	0	copy fasta	PER1	chr17	8135472	8157404
PER1_chr17_8135472_8157404	0/0	c0007	3873	4	0	1	3	0	0	copy fasta	PER1	chr17	8135472	8157404
PER1_chr17_8135472_8157404	0/0	c0008	3873	4	4	0	0	0	0	copy fasta	PER1	chr17	8135472	8157404
PER1_chr17_8135472_8157404	0/0	c0009	3873	3	3	0	0	0	0	copy fasta	PER1	chr17	8135472	8157404
PER1_chr17_8135472_8157404	0/0	c0010	3873	2	2	0	0	0	0	copy fasta	PER1	chr17	8135472	8157404
PER1_chr17_8135472_8157404	0/0	c0011	3873	2	0	0	0	0	2	copy fasta	PER1	chr17	8135472	8157404
PER1_chr17_8135472_8157404	0/0	c0012	3873	2	0	2	0	0	0	copy fasta	PER1	chr17	8135472	8157404
PER1_chr17_8135472_8157404	0/0	c0013	3873	2	0	1	1	0	0	copy fasta	PER1	chr17	8135472	8157404
PER1_chr17_8135472_8157404	0/0	c0014	3873	2	2	0	0	0	0	copy fasta	PER1	chr17	8135472	8157404
PER1_chr17_8135472_8157404	0/0	c0015	3873	2	0	2	0	0	0	copy fasta	PER1	chr17	8135472	8157404
PER1_chr17_8135472_8157404	0/0	c0016	3873	1	1	0	0	0	0	copy fasta	PER1	chr17	8135472	8157404
PER1_chr17_8135472_8157404	0/0	c0017	3856	1	0	0	1	0	0	copy fasta	PER1	chr17	8135472	8157404
PER1_chr17_8135472_8157404	0/0	c0018	3873	1	1	0	0	0	0	copy fasta	PER1	chr17	8135472	8157404
PER1_chr17_8135472_8157404	0/0	c0019	3873	1	1	0	0	0	0	copy fasta	PER1	chr17	8135472	8157404
PER1_chr17_8135472_8157404	0/0	c0020	3873	1	1	0	0	0	0	copy fasta	PER1	chr17	8135472	8157404
PER1_chr17_8135472_8157404	0/0	c0021	3873	1	1	0	0	0	0	copy fasta	PER1	chr17	8135472	8157404
PER1_chr17_8135472_8157404	0/0	c0022	3873	1	0	0	1	0	0	copy fasta	PER1	chr17	8135472	8157404
PER1_chr17_8135472_8157404	0/0	c0023	3873	1	0	0	1	0	0	copy fasta	PER1	chr17	8135472	8157404
PER1_chr17_8135472_8157404	0/0	c0024	3873	1	1	0	0	0	0	copy fasta	PER1	chr17	8135472	8157404
PER1_chr17_8135472_8157404	0/0	c0025	3873	1	0	0	0	0	1	copy fasta	PER1	chr17	8135472	8157404
PER1_chr17_8135472_8157404	0/0	c0026	3873	1	0	1	0	0	0	copy fasta	PER1	chr17	8135472	8157404
PER1_chr17_8135472_8157404	0/0	c0027	3873	1	0	1	0	0	0	copy fasta	PER1	chr17	8135472	8157404
PER1_chr17_8135472_8157404	0/0	c0028	3873	1	0	0	1	0	0	copy fasta	PER1	chr17	8135472	8157404
PER1_chr17_8135472_8157404	0/0	c0029	3873	1	0	0	1	0	0	copy fasta	PER1	chr17	8135472	8157404
PER1_chr17_8135472_8157404	0/0	c0030	3873	1	0	1	0	0	0	copy fasta	PER1	chr17	8135472	8157404
PER1_chr17_8135472_8157404	0/0	c0031	3873	1	0	0	0	0	1	copy fasta	PER1	chr17	8135472	8157404
PER1_chr17_8135472_8157404	0/0	c0032	3873	1	1	0	0	0	0	copy fasta	PER1	chr17	8135472	8157404
PER1_chr17_8135472_8157404	0/0	c0033	3873	1	0	1	0	0	0	copy fasta	PER1	chr17	8135472	8157404
PER1_chr17_8135472_8157404	0/0	c0034	3873	1	1	0	0	0	0	copy fasta	PER1	chr17	8135472	8157404