JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PER1_chr17_8135472_8157404	0/0	c0035	3873	1	1	0	0	0	0	copy fasta	PER1	chr17	8135472	8157404
PER1_chr17_8135472_8157404	0/0	c0036	3873	1	1	0	0	0	0	copy fasta	PER1	chr17	8135472	8157404
PER1_chr17_8135472_8157404	0/0	c0037	3873	1	0	0	1	0	0	copy fasta	PER1	chr17	8135472	8157404
PER1_chr17_8135472_8157404	0/0	c0038	3873	1	0	0	1	0	0	copy fasta	PER1	chr17	8135472	8157404
PER1_chr17_8135472_8157404	0/0	c0039	3873	1	0	0	1	0	0	copy fasta	PER1	chr17	8135472	8157404
PER1_chr17_8135472_8157404	0/0	c0040	3873	1	0	0	1	0	0	copy fasta	PER1	chr17	8135472	8157404
PER1_chr17_8135472_8157404	0/0	c0041	3873	1	0	0	0	0	1	copy fasta	PER1	chr17	8135472	8157404
PER1_chr17_8135472_8157404	0/0	c0042	3873	1	0	1	0	0	0	copy fasta	PER1	chr17	8135472	8157404
PER1_chr17_8135472_8157404	0/0	c0043	3873	1	0	1	0	0	0	copy fasta	PER1	chr17	8135472	8157404
PER2_chr2_238239044_238293610	1/1	c0001	3768	142	38	24	52	8	18	copy fasta	PER2	chr2	238239044	238293610
PER2_chr2_238239044_238293610	0/0	c0002	3768	61	1	15	34	3	8	copy fasta	PER2	chr2	238239044	238293610
PER2_chr2_238239044_238293610	0/0	c0003	3768	38	5	5	21	1	6	copy fasta	PER2	chr2	238239044	238293610
PER2_chr2_238239044_238293610	0/0	c0004	3768	35	9	5	15	1	5	copy fasta	PER2	chr2	238239044	238293610
PER2_chr2_238239044_238293610	0/0	c0005	3768	32	3	6	21	1	1	copy fasta	PER2	chr2	238239044	238293610
PER2_chr2_238239044_238293610	0/0	c0006	3768	12	9	3	0	0	0	copy fasta	PER2	chr2	238239044	238293610
PER2_chr2_238239044_238293610	0/0	c0007	3768	10	8	2	0	0	0	copy fasta	PER2	chr2	238239044	238293610
PER2_chr2_238239044_238293610	0/0	c0008	3768	7	0	0	3	0	4	copy fasta	PER2	chr2	238239044	238293610
PER2_chr2_238239044_238293610	0/0	c0009	3768	6	6	0	0	0	0	copy fasta	PER2	chr2	238239044	238293610
PER2_chr2_238239044_238293610	0/0	c0010	3768	3	3	0	0	0	0	copy fasta	PER2	chr2	238239044	238293610
PER2_chr2_238239044_238293610	0/0	c0011	3768	3	0	2	1	0	0	copy fasta	PER2	chr2	238239044	238293610
PER2_chr2_238239044_238293610	0/0	c0012	3768	2	0	0	0	0	2	copy fasta	PER2	chr2	238239044	238293610
PER2_chr2_238239044_238293610	0/0	c0013	3768	2	0	0	2	0	0	copy fasta	PER2	chr2	238239044	238293610
PER2_chr2_238239044_238293610	0/0	c0014	3768	1	0	0	1	0	0	copy fasta	PER2	chr2	238239044	238293610
PER2_chr2_238239044_238293610	0/0	c0015	3768	1	1	0	0	0	0	copy fasta	PER2	chr2	238239044	238293610
PER2_chr2_238239044_238293610	0/0	c0016	3768	1	1	0	0	0	0	copy fasta	PER2	chr2	238239044	238293610
PER2_chr2_238239044_238293610	0/0	c0017	3768	1	1	0	0	0	0	copy fasta	PER2	chr2	238239044	238293610
PER2_chr2_238239044_238293610	0/0	c0018	3768	1	0	1	0	0	0	copy fasta	PER2	chr2	238239044	238293610
PER2_chr2_238239044_238293610	0/0	c0019	3768	1	1	0	0	0	0	copy fasta	PER2	chr2	238239044	238293610
PER2_chr2_238239044_238293610	0/0	c0020	3768	1	0	0	1	0	0	copy fasta	PER2	chr2	238239044	238293610
PER2_chr2_238239044_238293610	0/0	c0021	3768	1	0	1	0	0	0	copy fasta	PER2	chr2	238239044	238293610
PER2_chr2_238239044_238293610	0/0	c0022	3768	1	0	1	0	0	0	copy fasta	PER2	chr2	238239044	238293610
PER2_chr2_238239044_238293610	0/0	c0023	3768	1	0	0	1	0	0	copy fasta	PER2	chr2	238239044	238293610
PER2_chr2_238239044_238293610	0/0	c0024	3768	1	0	1	0	0	0	copy fasta	PER2	chr2	238239044	238293610
PER2_chr2_238239044_238293610	0/0	c0025	3768	1	0	0	1	0	0	copy fasta	PER2	chr2	238239044	238293610
PER2_chr2_238239044_238293610	0/0	c0026	3768	1	0	0	1	0	0	copy fasta	PER2	chr2	238239044	238293610
PER2_chr2_238239044_238293610	0/0	c0027	3768	1	1	0	0	0	0	copy fasta	PER2	chr2	238239044	238293610
PER2_chr2_238239044_238293610	0/0	c0028	3768	1	1	0	0	0	0	copy fasta	PER2	chr2	238239044	238293610
PER2_chr2_238239044_238293610	0/0	c0029	3768	1	1	0	0	0	0	copy fasta	PER2	chr2	238239044	238293610
PER2_chr2_238239044_238293610	0/0	c0030	3768	1	1	0	0	0	0	copy fasta	PER2	chr2	238239044	238293610
PER3_chr1_7779291_7850177	0/0	c0001	3579	107	23	11	60	1	12	copy fasta	PER3	chr1	7779291	7850177
PER3_chr1_7779291_7850177	0/0	c0002	3633	87	26	14	31	4	12	copy fasta	PER3	chr1	7779291	7850177
PER3_chr1_7779291_7850177	0/0	c0003	3579	57	0	14	42	0	1	copy fasta	PER3	chr1	7779291	7850177
PER3_chr1_7779291_7850177	0/0	c0004	3579	36	20	5	7	4	0	copy fasta	PER3	chr1	7779291	7850177
PER3_chr1_7779291_7850177	0/0	c0005	3579	32	4	13	7	3	5	copy fasta	PER3	chr1	7779291	7850177
PER3_chr1_7779291_7850177	0/0	c0006	3579	31	0	9	18	0	4	copy fasta	PER3	chr1	7779291	7850177
PER3_chr1_7779291_7850177	0/0	c0007	3579	14	0	0	13	0	1	copy fasta	PER3	chr1	7779291	7850177
PER3_chr1_7779291_7850177	1/1	c0008	3633	7	1	2	0	2	0	copy fasta	PER3	chr1	7779291	7850177
PER3_chr1_7779291_7850177	0/0	c0009	3579	4	3	1	0	0	0	copy fasta	PER3	chr1	7779291	7850177
PER3_chr1_7779291_7850177	0/0	c0010	3579	4	0	3	0	0	1	copy fasta	PER3	chr1	7779291	7850177
PER3_chr1_7779291_7850177	0/0	c0011	3579	4	0	0	4	0	0	copy fasta	PER3	chr1	7779291	7850177