JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PER3_chr1_7779291_7850177	0/0	c0012	3633	3	3	0	0	0	0	copy fasta	PER3	chr1	7779291	7850177
PER3_chr1_7779291_7850177	0/0	c0013	3633	3	3	0	0	0	0	copy fasta	PER3	chr1	7779291	7850177
PER3_chr1_7779291_7850177	0/0	c0014	3579	2	0	0	2	0	0	copy fasta	PER3	chr1	7779291	7850177
PER3_chr1_7779291_7850177	0/0	c0015	3633	2	1	1	0	0	0	copy fasta	PER3	chr1	7779291	7850177
PER3_chr1_7779291_7850177	0/0	c0016	3633	2	2	0	0	0	0	copy fasta	PER3	chr1	7779291	7850177
PER3_chr1_7779291_7850177	0/0	c0017	3579	1	0	0	1	0	0	copy fasta	PER3	chr1	7779291	7850177
PER3_chr1_7779291_7850177	0/0	c0018	3579	1	1	0	0	0	0	copy fasta	PER3	chr1	7779291	7850177
PER3_chr1_7779291_7850177	0/0	c0019	3579	1	1	0	0	0	0	copy fasta	PER3	chr1	7779291	7850177
PER3_chr1_7779291_7850177	0/0	c0020	3579	1	1	0	0	0	0	copy fasta	PER3	chr1	7779291	7850177
PER3_chr1_7779291_7850177	0/0	c0021	3633	1	0	0	1	0	0	copy fasta	PER3	chr1	7779291	7850177
PER3_chr1_7779291_7850177	0/0	c0022	3579	1	1	0	0	0	0	copy fasta	PER3	chr1	7779291	7850177
PER3_chr1_7779291_7850177	0/0	c0023	3579	1	1	0	0	0	0	copy fasta	PER3	chr1	7779291	7850177
PER3_chr1_7779291_7850177	0/0	c0024	3633	1	0	1	0	0	0	copy fasta	PER3	chr1	7779291	7850177
PER3_chr1_7779291_7850177	0/0	c0025	3633	1	1	0	0	0	0	copy fasta	PER3	chr1	7779291	7850177
PER3_chr1_7779291_7850177	0/0	c0026	3633	1	1	0	0	0	0	copy fasta	PER3	chr1	7779291	7850177
PER3_chr1_7779291_7850177	0/0	c0027	3633	1	1	0	0	0	0	copy fasta	PER3	chr1	7779291	7850177
PER3_chr1_7779291_7850177	0/0	c0028	3579	1	0	0	1	0	0	copy fasta	PER3	chr1	7779291	7850177
PER3_chr1_7779291_7850177	0/0	c0029	3579	1	0	0	1	0	0	copy fasta	PER3	chr1	7779291	7850177
PER3_chr1_7779291_7850177	0/0	c0030	3633	1	0	0	1	0	0	copy fasta	PER3	chr1	7779291	7850177
PER3_chr1_7779291_7850177	0/0	c0031	3579	1	0	0	1	0	0	copy fasta	PER3	chr1	7779291	7850177
PERCC1_chr16_1426078_1439441	0/1	c0001	804	177	75	38	34	5	24	copy fasta	PERCC1	chr16	1426078	1439441
PERCC1_chr16_1426078_1439441	0/0	c0002	801	138	9	31	79	6	13	copy fasta	PERCC1	chr16	1426078	1439441
PERCC1_chr16_1426078_1439441	1/0	c0003	804	15	2	8	0	1	3	copy fasta	PERCC1	chr16	1426078	1439441
PERCC1_chr16_1426078_1439441	0/0	c0004	792	15	0	2	8	0	5	copy fasta	PERCC1	chr16	1426078	1439441
PERCC1_chr16_1426078_1439441	0/0	c0005	798	6	0	0	0	4	2	copy fasta	PERCC1	chr16	1426078	1439441
PERCC1_chr16_1426078_1439441	0/0	c0006	807	4	3	0	0	0	1	copy fasta	PERCC1	chr16	1426078	1439441
PERCC1_chr16_1426078_1439441	0/0	c0007	804	4	4	0	0	0	0	copy fasta	PERCC1	chr16	1426078	1439441
PERCC1_chr16_1426078_1439441	0/0	c0008	801	3	0	0	3	0	0	copy fasta	PERCC1	chr16	1426078	1439441
PERCC1_chr16_1426078_1439441	0/0	c0009	804	2	2	0	0	0	0	copy fasta	PERCC1	chr16	1426078	1439441
PERCC1_chr16_1426078_1439441	0/0	c0010	789	2	0	0	2	0	0	copy fasta	PERCC1	chr16	1426078	1439441
PERCC1_chr16_1426078_1439441	0/0	c0011	801	2	0	1	0	0	1	copy fasta	PERCC1	chr16	1426078	1439441
PERCC1_chr16_1426078_1439441	0/0	c0012	801	1	0	0	1	0	0	copy fasta	PERCC1	chr16	1426078	1439441
PERCC1_chr16_1426078_1439441	0/0	c0013	801	1	0	0	1	0	0	copy fasta	PERCC1	chr16	1426078	1439441
PERCC1_chr16_1426078_1439441	0/0	c0014	816	1	1	0	0	0	0	copy fasta	PERCC1	chr16	1426078	1439441
PERCC1_chr16_1426078_1439441	0/0	c0015	807	1	1	0	0	0	0	copy fasta	PERCC1	chr16	1426078	1439441
PERCC1_chr16_1426078_1439441	0/0	c0016	804	1	1	0	0	0	0	copy fasta	PERCC1	chr16	1426078	1439441
PERCC1_chr16_1426078_1439441	0/0	c0017	813	1	1	0	0	0	0	copy fasta	PERCC1	chr16	1426078	1439441
PERCC1_chr16_1426078_1439441	0/0	c0018	801	1	0	0	1	0	0	copy fasta	PERCC1	chr16	1426078	1439441
PERCC1_chr16_1426078_1439441	0/0	c0019	801	1	0	0	0	0	1	copy fasta	PERCC1	chr16	1426078	1439441
PERCC1_chr16_1426078_1439441	0/0	c0020	798	1	1	0	0	0	0	copy fasta	PERCC1	chr16	1426078	1439441
PERCC1_chr16_1426078_1439441	0/0	c0021	792	1	0	0	1	0	0	copy fasta	PERCC1	chr16	1426078	1439441
PERM1_chr1_970198_987093	0/1	c0001	2373	192	19	34	109	6	23	copy fasta	PERM1	chr1	970198	987093
PERM1_chr1_970198_987093	0/0	c0002	2373	60	20	18	12	2	8	copy fasta	PERM1	chr1	970198	987093
PERM1_chr1_970198_987093	0/0	c0003	2373	43	11	8	11	5	8	copy fasta	PERM1	chr1	970198	987093
PERM1_chr1_970198_987093	0/0	c0004	2373	20	5	2	13	0	0	copy fasta	PERM1	chr1	970198	987093
PERM1_chr1_970198_987093	0/0	c0005	2373	17	17	0	0	0	0	copy fasta	PERM1	chr1	970198	987093
PERM1_chr1_970198_987093	1/0	c0006	2373	11	7	1	0	1	1	copy fasta	PERM1	chr1	970198	987093
PERM1_chr1_970198_987093	0/0	c0007	2373	10	0	7	3	0	0	copy fasta	PERM1	chr1	970198	987093
PERM1_chr1_970198_987093	0/0	c0008	2373	6	1	2	0	2	1	copy fasta	PERM1	chr1	970198	987093
PERM1_chr1_970198_987093	0/0	c0009	2373	5	5	0	0	0	0	copy fasta	PERM1	chr1	970198	987093