JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PERM1_chr1_970198_987093	0/0	c0010	2373	4	0	0	4	0	0	copy fasta	PERM1	chr1	970198	987093
PERM1_chr1_970198_987093	0/0	c0011	2373	3	3	0	0	0	0	copy fasta	PERM1	chr1	970198	987093
PERM1_chr1_970198_987093	0/0	c0012	2373	3	0	0	3	0	0	copy fasta	PERM1	chr1	970198	987093
PERM1_chr1_970198_987093	0/0	c0013	2373	2	2	0	0	0	0	copy fasta	PERM1	chr1	970198	987093
PERM1_chr1_970198_987093	0/0	c0014	2373	2	0	0	2	0	0	copy fasta	PERM1	chr1	970198	987093
PERM1_chr1_970198_987093	0/0	c0015	2373	2	2	0	0	0	0	copy fasta	PERM1	chr1	970198	987093
PERM1_chr1_970198_987093	0/0	c0016	2373	2	0	0	2	0	0	copy fasta	PERM1	chr1	970198	987093
PERM1_chr1_970198_987093	0/0	c0017	2373	1	0	0	0	0	1	copy fasta	PERM1	chr1	970198	987093
PERM1_chr1_970198_987093	0/0	c0018	2373	1	0	1	0	0	0	copy fasta	PERM1	chr1	970198	987093
PERM1_chr1_970198_987093	0/0	c0019	2373	1	0	0	0	0	1	copy fasta	PERM1	chr1	970198	987093
PERM1_chr1_970198_987093	0/0	c0020	2373	1	0	1	0	0	0	copy fasta	PERM1	chr1	970198	987093
PERM1_chr1_970198_987093	0/0	c0021	2373	1	0	0	1	0	0	copy fasta	PERM1	chr1	970198	987093
PERM1_chr1_970198_987093	0/0	c0022	2373	1	0	1	0	0	0	copy fasta	PERM1	chr1	970198	987093
PERM1_chr1_970198_987093	0/0	c0023	2373	1	1	0	0	0	0	copy fasta	PERM1	chr1	970198	987093
PERM1_chr1_970198_987093	0/0	c0024	2373	1	0	0	1	0	0	copy fasta	PERM1	chr1	970198	987093
PERM1_chr1_970198_987093	0/0	c0025	2373	1	1	0	0	0	0	copy fasta	PERM1	chr1	970198	987093
PERM1_chr1_970198_987093	0/0	c0026	2373	1	0	1	0	0	0	copy fasta	PERM1	chr1	970198	987093
PERM1_chr1_970198_987093	0/0	c0027	2373	1	1	0	0	0	0	copy fasta	PERM1	chr1	970198	987093
PERM1_chr1_970198_987093	0/0	c0028	2373	1	0	1	0	0	0	copy fasta	PERM1	chr1	970198	987093
PERM1_chr1_970198_987093	0/0	c0029	2373	1	0	1	0	0	0	copy fasta	PERM1	chr1	970198	987093
PERM1_chr1_970198_987093	0/0	c0030	2373	1	0	1	0	0	0	copy fasta	PERM1	chr1	970198	987093
PERM1_chr1_970198_987093	0/0	c0031	2373	1	1	0	0	0	0	copy fasta	PERM1	chr1	970198	987093
PERM1_chr1_970198_987093	0/0	c0032	2373	1	0	0	0	0	1	copy fasta	PERM1	chr1	970198	987093
PERM1_chr1_970198_987093	0/0	c0033	2373	1	0	0	0	0	1	copy fasta	PERM1	chr1	970198	987093
PERM1_chr1_970198_987093	0/0	c0034	2373	1	0	0	0	0	1	copy fasta	PERM1	chr1	970198	987093
PERM1_chr1_970198_987093	0/0	c0035	2373	1	0	0	1	0	0	copy fasta	PERM1	chr1	970198	987093
PERM1_chr1_970198_987093	0/0	c0036	2373	1	0	0	1	0	0	copy fasta	PERM1	chr1	970198	987093
PERM1_chr1_970198_987093	0/0	c0037	2373	1	1	0	0	0	0	copy fasta	PERM1	chr1	970198	987093
PERM1_chr1_970198_987093	0/0	c0038	2373	1	0	0	1	0	0	copy fasta	PERM1	chr1	970198	987093
PERM1_chr1_970198_987093	0/0	c0039	2373	1	1	0	0	0	0	copy fasta	PERM1	chr1	970198	987093
PERM1_chr1_970198_987093	0/0	c0040	2373	1	0	1	0	0	0	copy fasta	PERM1	chr1	970198	987093
PERM1_chr1_970198_987093	0/0	c0041	2373	1	0	0	1	0	0	copy fasta	PERM1	chr1	970198	987093
PERM1_chr1_970198_987093	0/0	c0042	2373	1	0	0	1	0	0	copy fasta	PERM1	chr1	970198	987093
PERP_chr6_138083505_138112419	0/0	c0001	582	264	57	43	117	10	37	copy fasta	PERP	chr6	138083505	138112419
PERP_chr6_138083505_138112419	1/1	c0002	582	152	33	38	67	5	7	copy fasta	PERP	chr6	138083505	138112419
PERP_chr6_138083505_138112419	0/0	c0003	582	5	0	0	5	0	0	copy fasta	PERP	chr6	138083505	138112419
PERP_chr6_138083505_138112419	0/0	c0004	582	2	2	0	0	0	0	copy fasta	PERP	chr6	138083505	138112419
PERP_chr6_138083505_138112419	0/0	c0005	582	2	2	0	0	0	0	copy fasta	PERP	chr6	138083505	138112419
PERP_chr6_138083505_138112419	0/0	c0006	582	2	0	1	0	1	0	copy fasta	PERP	chr6	138083505	138112419
PERP_chr6_138083505_138112419	0/0	c0007	582	2	2	0	0	0	0	copy fasta	PERP	chr6	138083505	138112419
PERP_chr6_138083505_138112419	0/0	c0008	582	1	0	0	1	0	0	copy fasta	PERP	chr6	138083505	138112419
PES1_chr22_30571625_30596910	1/1	c0001	1767	321	61	65	137	17	39	copy fasta	PES1	chr22	30571625	30596910
PES1_chr22_30571625_30596910	0/0	c0002	1767	73	10	9	51	1	2	copy fasta	PES1	chr22	30571625	30596910
PES1_chr22_30571625_30596910	0/0	c0003	1767	11	7	3	0	0	1	copy fasta	PES1	chr22	30571625	30596910
PES1_chr22_30571625_30596910	0/0	c0004	1767	8	0	5	3	0	0	copy fasta	PES1	chr22	30571625	30596910
PES1_chr22_30571625_30596910	0/0	c0005	1767	3	3	0	0	0	0	copy fasta	PES1	chr22	30571625	30596910
PES1_chr22_30571625_30596910	0/0	c0006	1767	2	2	0	0	0	0	copy fasta	PES1	chr22	30571625	30596910
PES1_chr22_30571625_30596910	0/0	c0007	1767	2	0	0	2	0	0	copy fasta	PES1	chr22	30571625	30596910
PES1_chr22_30571625_30596910	0/0	c0008	1767	2	0	2	0	0	0	copy fasta	PES1	chr22	30571625	30596910
PES1_chr22_30571625_30596910	0/0	c0009	1767	1	1	0	0	0	0	copy fasta	PES1	chr22	30571625	30596910