JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PES1_chr22_30571625_30596910	0/0	c0010	1767	1	0	0	1	0	0	copy fasta	PES1	chr22	30571625	30596910
PES1_chr22_30571625_30596910	0/0	c0011	1767	1	1	0	0	0	0	copy fasta	PES1	chr22	30571625	30596910
PES1_chr22_30571625_30596910	0/0	c0012	1767	1	1	0	0	0	0	copy fasta	PES1	chr22	30571625	30596910
PES1_chr22_30571625_30596910	0/0	c0013	1767	1	0	0	0	0	1	copy fasta	PES1	chr22	30571625	30596910
PES1_chr22_30571625_30596910	0/0	c0014	1767	1	0	0	1	0	0	copy fasta	PES1	chr22	30571625	30596910
PES1_chr22_30571625_30596910	0/0	c0015	1767	1	0	0	1	0	0	copy fasta	PES1	chr22	30571625	30596910
PES1_chr22_30571625_30596910	0/0	c0016	1767	1	1	0	0	0	0	copy fasta	PES1	chr22	30571625	30596910
PES1_chr22_30571625_30596910	0/0	c0017	1767	1	1	0	0	0	0	copy fasta	PES1	chr22	30571625	30596910
PES1_chr22_30571625_30596910	0/0	c0018	1767	1	0	0	0	0	1	copy fasta	PES1	chr22	30571625	30596910
PET100_chr19_7624793_7636956	1/1	c0001	222	378	97	79	143	16	41	copy fasta	PET100	chr19	7624793	7636956
PET100_chr19_7624793_7636956	0/0	c0002	222	22	0	1	21	0	0	copy fasta	PET100	chr19	7624793	7636956
PET100_chr19_7624793_7636956	0/0	c0003	222	1	1	0	0	0	0	copy fasta	PET100	chr19	7624793	7636956
PET100_chr19_7624793_7636956	0/0	c0004	222	1	0	0	0	0	1	copy fasta	PET100	chr19	7624793	7636956
PET117_chr20_18132863_18148169	1/1	c0001	246	416	96	79	175	18	46	copy fasta	PET117	chr20	18132863	18148169
PET117_chr20_18132863_18148169	0/0	c0002	246	5	0	0	5	0	0	copy fasta	PET117	chr20	18132863	18148169
PET117_chr20_18132863_18148169	0/0	c0003	246	1	0	0	1	0	0	copy fasta	PET117	chr20	18132863	18148169
PET117_chr20_18132863_18148169	0/0	c0004	246	1	0	1	0	0	0	copy fasta	PET117	chr20	18132863	18148169
PET117_chr20_18132863_18148169	0/0	c0005	246	1	0	0	1	0	0	copy fasta	PET117	chr20	18132863	18148169
PEX10_chr1_2398974_2417564	0/1	c0001	981	223	37	54	99	10	22	copy fasta	PEX10	chr1	2398974	2417564
PEX10_chr1_2398974_2417564	1/0	c0002	981	102	38	13	30	6	14	copy fasta	PEX10	chr1	2398974	2417564
PEX10_chr1_2398974_2417564	0/0	c0003	981	8	8	0	0	0	0	copy fasta	PEX10	chr1	2398974	2417564
PEX10_chr1_2398974_2417564	0/0	c0004	981	6	0	1	0	2	3	copy fasta	PEX10	chr1	2398974	2417564
PEX10_chr1_2398974_2417564	0/0	c0005	981	5	0	0	0	0	5	copy fasta	PEX10	chr1	2398974	2417564
PEX10_chr1_2398974_2417564	0/0	c0006	981	4	0	0	4	0	0	copy fasta	PEX10	chr1	2398974	2417564
PEX10_chr1_2398974_2417564	0/0	c0007	981	1	0	0	1	0	0	copy fasta	PEX10	chr1	2398974	2417564
PEX10_chr1_2398974_2417564	0/0	c0008	981	1	0	0	0	0	1	copy fasta	PEX10	chr1	2398974	2417564
PEX10_chr1_2398974_2417564	0/0	c0009	981	1	1	0	0	0	0	copy fasta	PEX10	chr1	2398974	2417564
PEX10_chr1_2398974_2417564	0/0	c0010	981	1	1	0	0	0	0	copy fasta	PEX10	chr1	2398974	2417564
PEX10_chr1_2398974_2417564	0/0	c0011	981	1	1	0	0	0	0	copy fasta	PEX10	chr1	2398974	2417564
PEX10_chr1_2398974_2417564	0/0	c0012	981	1	1	0	0	0	0	copy fasta	PEX10	chr1	2398974	2417564
PEX10_chr1_2398974_2417564	0/0	c0013	981	1	0	0	0	0	1	copy fasta	PEX10	chr1	2398974	2417564
PEX10_chr1_2398974_2417564	0/0	c0014	981	1	0	0	1	0	0	copy fasta	PEX10	chr1	2398974	2417564
PEX10_chr1_2398974_2417564	0/0	c0015	981	1	1	0	0	0	0	copy fasta	PEX10	chr1	2398974	2417564
PEX10_chr1_2398974_2417564	0/0	c0016	981	1	0	0	1	0	0	copy fasta	PEX10	chr1	2398974	2417564
PEX11A_chr15_89676535_89695754	1/0	c0001	744	239	45	42	114	6	31	copy fasta	PEX11A	chr15	89676535	89695754
PEX11A_chr15_89676535_89695754	0/1	c0002	744	190	49	35	74	12	19	copy fasta	PEX11A	chr15	89676535	89695754
PEX11A_chr15_89676535_89695754	0/0	c0003	744	1	0	0	1	0	0	copy fasta	PEX11A	chr15	89676535	89695754
PEX11A_chr15_89676535_89695754	0/0	c0004	744	1	0	0	1	0	0	copy fasta	PEX11A	chr15	89676535	89695754
PEX11A_chr15_89676535_89695754	0/0	c0005	744	1	0	1	0	0	0	copy fasta	PEX11A	chr15	89676535	89695754
PEX11B_chr1_145906350_145923717	1/1	c0001	780	366	93	68	156	6	41	copy fasta	PEX11B	chr1	145906350	145923717
PEX11B_chr1_145906350_145923717	0/0	c0002	780	1	0	0	0	0	1	copy fasta	PEX11B	chr1	145906350	145923717
PEX11B_chr1_145906350_145923717	0/0	c0003	780	1	1	0	0	0	0	copy fasta	PEX11B	chr1	145906350	145923717
PEX11G_chr19_7471875_7494035	1/1	c0001	726	177	14	44	80	13	24	copy fasta	PEX11G	chr19	7471875	7494035
PEX11G_chr19_7471875_7494035	0/0	c0002	726	72	23	2	41	1	5	copy fasta	PEX11G	chr19	7471875	7494035
PEX11G_chr19_7471875_7494035	0/0	c0003	726	70	25	14	20	3	8	copy fasta	PEX11G	chr19	7471875	7494035
PEX11G_chr19_7471875_7494035	0/0	c0004	726	60	2	9	41	0	8	copy fasta	PEX11G	chr19	7471875	7494035
PEX11G_chr19_7471875_7494035	0/0	c0005	726	22	22	0	0	0	0	copy fasta	PEX11G	chr19	7471875	7494035
PEX11G_chr19_7471875_7494035	0/0	c0006	728	5	5	0	0	0	0	copy fasta	PEX11G	chr19	7471875	7494035
PEX11G_chr19_7471875_7494035	0/0	c0007	726	5	1	3	0	0	1	copy fasta	PEX11G	chr19	7471875	7494035
PEX11G_chr19_7471875_7494035	0/0	c0008	726	2	0	0	1	1	0	copy fasta	PEX11G	chr19	7471875	7494035