JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PEX11G_chr19_7471875_7494035	0/0	c0009	726	1	0	0	1	0	0	copy fasta	PEX11G	chr19	7471875	7494035
PEX11G_chr19_7471875_7494035	0/0	c0010	726	1	1	0	0	0	0	copy fasta	PEX11G	chr19	7471875	7494035
PEX11G_chr19_7471875_7494035	0/0	c0011	726	1	1	0	0	0	0	copy fasta	PEX11G	chr19	7471875	7494035
PEX12_chr17_35569795_35583571	1/1	c0001	1080	430	91	77	208	14	38	copy fasta	PEX12	chr17	35569795	35583571
PEX12_chr17_35569795_35583571	0/0	c0002	1080	2	2	0	0	0	0	copy fasta	PEX12	chr17	35569795	35583571
PEX12_chr17_35569795_35583571	0/0	c0003	1080	2	0	0	2	0	0	copy fasta	PEX12	chr17	35569795	35583571
PEX12_chr17_35569795_35583571	0/0	c0004	1080	1	1	0	0	0	0	copy fasta	PEX12	chr17	35569795	35583571
PEX12_chr17_35569795_35583571	0/0	c0005	1080	1	0	1	0	0	0	copy fasta	PEX12	chr17	35569795	35583571
PEX13_chr2_61012720_61056990	1/1	c0001	1212	345	84	75	150	12	22	copy fasta	PEX13	chr2	61012720	61056990
PEX13_chr2_61012720_61056990	0/0	c0002	1212	4	4	0	0	0	0	copy fasta	PEX13	chr2	61012720	61056990
PEX13_chr2_61012720_61056990	0/0	c0003	1212	1	0	0	0	1	0	copy fasta	PEX13	chr2	61012720	61056990
PEX13_chr2_61012720_61056990	0/0	c0004	1212	1	1	0	0	0	0	copy fasta	PEX13	chr2	61012720	61056990
PEX13_chr2_61012720_61056990	0/0	c0005	1212	1	0	0	0	1	0	copy fasta	PEX13	chr2	61012720	61056990
PEX13_chr2_61012720_61056990	0/0	c0006	1212	1	0	1	0	0	0	copy fasta	PEX13	chr2	61012720	61056990
PEX13_chr2_61012720_61056990	0/0	c0007	1212	1	1	0	0	0	0	copy fasta	PEX13	chr2	61012720	61056990
PEX14_chr1_10469950_10635758	1/0	c0001	1134	141	52	21	51	4	12	copy fasta	PEX14	chr1	10469950	10635758
PEX14_chr1_10469950_10635758	0/0	c0002	1134	44	3	16	18	3	4	copy fasta	PEX14	chr1	10469950	10635758
PEX14_chr1_10469950_10635758	0/0	c0003	1134	23	6	1	12	1	3	copy fasta	PEX14	chr1	10469950	10635758
PEX14_chr1_10469950_10635758	0/1	c0004	1134	16	2	5	3	2	3	copy fasta	PEX14	chr1	10469950	10635758
PEX14_chr1_10469950_10635758	0/0	c0005	1134	9	8	1	0	0	0	copy fasta	PEX14	chr1	10469950	10635758
PEX14_chr1_10469950_10635758	0/0	c0006	1134	5	5	0	0	0	0	copy fasta	PEX14	chr1	10469950	10635758
PEX14_chr1_10469950_10635758	0/0	c0007	1134	4	0	1	1	0	2	copy fasta	PEX14	chr1	10469950	10635758
PEX14_chr1_10469950_10635758	0/0	c0008	1134	3	1	1	1	0	0	copy fasta	PEX14	chr1	10469950	10635758
PEX14_chr1_10469950_10635758	0/0	c0009	1134	2	0	0	2	0	0	copy fasta	PEX14	chr1	10469950	10635758
PEX14_chr1_10469950_10635758	0/0	c0010	1134	2	2	0	0	0	0	copy fasta	PEX14	chr1	10469950	10635758
PEX14_chr1_10469950_10635758	0/0	c0011	1134	2	0	1	0	0	1	copy fasta	PEX14	chr1	10469950	10635758
PEX14_chr1_10469950_10635758	0/0	c0012	1134	1	0	0	1	0	0	copy fasta	PEX14	chr1	10469950	10635758
PEX14_chr1_10469950_10635758	0/0	c0013	1134	1	1	0	0	0	0	copy fasta	PEX14	chr1	10469950	10635758
PEX14_chr1_10469950_10635758	0/0	c0014	1134	1	1	0	0	0	0	copy fasta	PEX14	chr1	10469950	10635758
PEX14_chr1_10469950_10635758	0/0	c0015	1134	1	1	0	0	0	0	copy fasta	PEX14	chr1	10469950	10635758
PEX14_chr1_10469950_10635758	0/0	c0016	1134	1	0	1	0	0	0	copy fasta	PEX14	chr1	10469950	10635758
PEX14_chr1_10469950_10635758	0/0	c0017	1134	1	0	0	0	0	1	copy fasta	PEX14	chr1	10469950	10635758
PEX14_chr1_10469950_10635758	0/0	c0018	1134	1	0	0	1	0	0	copy fasta	PEX14	chr1	10469950	10635758
PEX16_chr11_45904663_45922877	0/1	c0001	1011	226	52	51	72	12	38	copy fasta	PEX16	chr11	45904663	45922877
PEX16_chr11_45904663_45922877	0/0	c0002	1011	109	27	18	58	2	4	copy fasta	PEX16	chr11	45904663	45922877
PEX16_chr11_45904663_45922877	0/0	c0003	1011	12	12	0	0	0	0	copy fasta	PEX16	chr11	45904663	45922877
PEX16_chr11_45904663_45922877	0/0	c0004	1011	8	0	4	0	2	2	copy fasta	PEX16	chr11	45904663	45922877
PEX16_chr11_45904663_45922877	0/0	c0005	1011	5	0	4	0	0	1	copy fasta	PEX16	chr11	45904663	45922877
PEX16_chr11_45904663_45922877	0/0	c0006	1011	4	3	1	0	0	0	copy fasta	PEX16	chr11	45904663	45922877
PEX16_chr11_45904663_45922877	0/0	c0007	1011	2	0	2	0	0	0	copy fasta	PEX16	chr11	45904663	45922877
PEX16_chr11_45904663_45922877	0/0	c0008	1011	1	0	0	0	0	1	copy fasta	PEX16	chr11	45904663	45922877
PEX16_chr11_45904663_45922877	0/0	c0009	1011	1	0	0	1	0	0	copy fasta	PEX16	chr11	45904663	45922877
PEX16_chr11_45904663_45922877	1/0	c0010	1011	1	0	0	0	0	0	copy fasta	PEX16	chr11	45904663	45922877
PEX16_chr11_45904663_45922877	0/0	c0011	1011	1	0	0	1	0	0	copy fasta	PEX16	chr11	45904663	45922877
PEX19_chr1_160271807_160290133	1/1	c0001	900	355	87	65	156	13	32	copy fasta	PEX19	chr1	160271807	160290133
PEX19_chr1_160271807_160290133	0/0	c0002	900	15	3	0	12	0	0	copy fasta	PEX19	chr1	160271807	160290133
PEX19_chr1_160271807_160290133	0/0	c0003	900	2	0	0	2	0	0	copy fasta	PEX19	chr1	160271807	160290133
PEX19_chr1_160271807_160290133	0/0	c0004	900	2	2	0	0	0	0	copy fasta	PEX19	chr1	160271807	160290133
PEX19_chr1_160271807_160290133	0/0	c0005	900	1	0	0	0	1	0	copy fasta	PEX19	chr1	160271807	160290133
PEX19_chr1_160271807_160290133	0/0	c0006	900	1	0	1	0	0	0	copy fasta	PEX19	chr1	160271807	160290133