JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PEX19_chr1_160271807_160290133	0/0	c0007	900	1	0	0	1	0	0	copy fasta	PEX19	chr1	160271807	160290133
PEX19_chr1_160271807_160290133	0/0	c0008	900	1	0	0	1	0	0	copy fasta	PEX19	chr1	160271807	160290133
PEX1_chr7_92482025_92533520	0/1	c0001	3852	266	58	37	131	9	30	copy fasta	PEX1	chr7	92482025	92533520
PEX1_chr7_92482025_92533520	1/0	c0002	3852	19	0	6	9	2	1	copy fasta	PEX1	chr7	92482025	92533520
PEX1_chr7_92482025_92533520	0/0	c0003	3852	4	0	0	0	0	4	copy fasta	PEX1	chr7	92482025	92533520
PEX1_chr7_92482025_92533520	0/0	c0004	3852	3	3	0	0	0	0	copy fasta	PEX1	chr7	92482025	92533520
PEX1_chr7_92482025_92533520	0/0	c0005	3852	2	0	1	1	0	0	copy fasta	PEX1	chr7	92482025	92533520
PEX1_chr7_92482025_92533520	0/0	c0006	3852	2	2	0	0	0	0	copy fasta	PEX1	chr7	92482025	92533520
PEX1_chr7_92482025_92533520	0/0	c0007	3852	2	2	0	0	0	0	copy fasta	PEX1	chr7	92482025	92533520
PEX1_chr7_92482025_92533520	0/0	c0008	3852	1	0	0	1	0	0	copy fasta	PEX1	chr7	92482025	92533520
PEX1_chr7_92482025_92533520	0/0	c0009	3852	1	1	0	0	0	0	copy fasta	PEX1	chr7	92482025	92533520
PEX1_chr7_92482025_92533520	0/0	c0010	3852	1	1	0	0	0	0	copy fasta	PEX1	chr7	92482025	92533520
PEX1_chr7_92482025_92533520	0/0	c0011	3852	1	0	0	1	0	0	copy fasta	PEX1	chr7	92482025	92533520
PEX1_chr7_92482025_92533520	0/0	c0012	3852	1	1	0	0	0	0	copy fasta	PEX1	chr7	92482025	92533520
PEX1_chr7_92482025_92533520	0/0	c0013	3852	1	0	0	0	0	1	copy fasta	PEX1	chr7	92482025	92533520
PEX1_chr7_92482025_92533520	0/0	c0014	3852	1	0	0	0	0	1	copy fasta	PEX1	chr7	92482025	92533520
PEX1_chr7_92482025_92533520	0/0	c0015	3852	1	0	0	1	0	0	copy fasta	PEX1	chr7	92482025	92533520
PEX1_chr7_92482025_92533520	0/0	c0016	3852	1	0	0	0	1	0	copy fasta	PEX1	chr7	92482025	92533520
PEX1_chr7_92482025_92533520	0/0	c0017	3852	1	1	0	0	0	0	copy fasta	PEX1	chr7	92482025	92533520
PEX1_chr7_92482025_92533520	0/0	c0018	3852	1	1	0	0	0	0	copy fasta	PEX1	chr7	92482025	92533520
PEX1_chr7_92482025_92533520	0/0	c0019	3852	1	0	0	0	0	1	copy fasta	PEX1	chr7	92482025	92533520
PEX26_chr22_18072990_18110396	1/1	c0001	918	391	88	69	178	12	42	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	c0002	918	6	4	2	0	0	0	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	c0003	918	1	0	1	0	0	0	copy fasta	PEX26	chr22	18072990	18110396
PEX2_chr8_76975258_77005078	0/1	c0001	918	385	75	70	185	14	40	copy fasta	PEX2	chr8	76975258	77005078
PEX2_chr8_76975258_77005078	0/0	c0002	918	15	13	2	0	0	0	copy fasta	PEX2	chr8	76975258	77005078
PEX2_chr8_76975258_77005078	0/0	c0003	918	6	6	0	0	0	0	copy fasta	PEX2	chr8	76975258	77005078
PEX2_chr8_76975258_77005078	0/0	c0004	918	1	0	1	0	0	0	copy fasta	PEX2	chr8	76975258	77005078
PEX2_chr8_76975258_77005078	0/0	c0005	918	1	1	0	0	0	0	copy fasta	PEX2	chr8	76975258	77005078
PEX2_chr8_76975258_77005078	0/0	c0006	918	1	0	1	0	0	0	copy fasta	PEX2	chr8	76975258	77005078
PEX2_chr8_76975258_77005078	1/0	c0007	918	1	0	0	0	0	0	copy fasta	PEX2	chr8	76975258	77005078
PEX2_chr8_76975258_77005078	0/0	c0008	918	1	0	0	1	0	0	copy fasta	PEX2	chr8	76975258	77005078
PEX2_chr8_76975258_77005078	0/0	c0009	918	1	1	0	0	0	0	copy fasta	PEX2	chr8	76975258	77005078
PEX3_chr6_143445805_143495616	1/1	c0001	1122	402	89	66	186	16	43	copy fasta	PEX3	chr6	143445805	143495616
PEX3_chr6_143445805_143495616	0/0	c0002	1122	9	0	6	2	0	1	copy fasta	PEX3	chr6	143445805	143495616
PEX3_chr6_143445805_143495616	0/0	c0003	1122	1	1	0	0	0	0	copy fasta	PEX3	chr6	143445805	143495616
PEX5L_chr3_179789958_180041937	1/1	c0001	1881	206	79	39	48	6	32	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	c0002	1881	7	5	2	0	0	0	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	c0003	1881	3	3	0	0	0	0	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	c0004	1881	3	1	2	0	0	0	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	c0005	1881	1	0	1	0	0	0	copy fasta	PEX5L	chr3	179789958	180041937
PEX5_chr12_7184686_7216459	0/0	c0001	1908	376	79	64	181	15	37	copy fasta	PEX5	chr12	7184686	7216459
PEX5_chr12_7184686_7216459	1/0	c0002	1920	36	14	4	10	1	6	copy fasta	PEX5	chr12	7184686	7216459
PEX5_chr12_7184686_7216459	0/0	c0003	1908	4	4	0	0	0	0	copy fasta	PEX5	chr12	7184686	7216459
PEX5_chr12_7184686_7216459	0/0	c0004	1965	3	0	0	2	0	1	copy fasta	PEX5	chr12	7184686	7216459
PEX5_chr12_7184686_7216459	0/0	c0005	1908	2	1	0	1	0	0	copy fasta	PEX5	chr12	7184686	7216459
PEX5_chr12_7184686_7216459	0/0	c0006	1920	2	2	0	0	0	0	copy fasta	PEX5	chr12	7184686	7216459
PEX5_chr12_7184686_7216459	0/1	c0007	1908	1	0	0	0	0	0	copy fasta	PEX5	chr12	7184686	7216459
PEX5_chr12_7184686_7216459	0/0	c0008	1908	1	0	0	1	0	0	copy fasta	PEX5	chr12	7184686	7216459
PEX5_chr12_7184686_7216459	0/0	c0009	1908	1	0	0	1	0	0	copy fasta	PEX5	chr12	7184686	7216459