JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PEX5_chr12_7184686_7216459	0/0	c0010	1908	1	0	0	1	0	0	copy fasta	PEX5	chr12	7184686	7216459
PEX5_chr12_7184686_7216459	0/0	c0011	1908	1	0	0	1	0	0	copy fasta	PEX5	chr12	7184686	7216459
PEX6_chr6_42958865_42984181	1/0	c0001	2943	131	9	27	82	4	8	copy fasta	PEX6	chr6	42958865	42984181
PEX6_chr6_42958865_42984181	0/0	c0002	2943	98	37	20	23	2	16	copy fasta	PEX6	chr6	42958865	42984181
PEX6_chr6_42958865_42984181	0/0	c0003	2943	64	8	20	26	1	9	copy fasta	PEX6	chr6	42958865	42984181
PEX6_chr6_42958865_42984181	0/1	c0004	2943	32	7	2	16	1	5	copy fasta	PEX6	chr6	42958865	42984181
PEX6_chr6_42958865_42984181	0/0	c0005	2943	14	13	1	0	0	0	copy fasta	PEX6	chr6	42958865	42984181
PEX6_chr6_42958865_42984181	0/0	c0006	2943	6	6	0	0	0	0	copy fasta	PEX6	chr6	42958865	42984181
PEX6_chr6_42958865_42984181	0/0	c0007	2943	4	4	0	0	0	0	copy fasta	PEX6	chr6	42958865	42984181
PEX6_chr6_42958865_42984181	0/0	c0008	2943	4	4	0	0	0	0	copy fasta	PEX6	chr6	42958865	42984181
PEX6_chr6_42958865_42984181	0/0	c0009	2943	3	0	0	3	0	0	copy fasta	PEX6	chr6	42958865	42984181
PEX6_chr6_42958865_42984181	0/0	c0010	2943	3	3	0	0	0	0	copy fasta	PEX6	chr6	42958865	42984181
PEX6_chr6_42958865_42984181	0/0	c0011	2943	2	0	2	0	0	0	copy fasta	PEX6	chr6	42958865	42984181
PEX6_chr6_42958865_42984181	0/0	c0012	2943	2	0	0	2	0	0	copy fasta	PEX6	chr6	42958865	42984181
PEX6_chr6_42958865_42984181	0/0	c0013	2943	2	2	0	0	0	0	copy fasta	PEX6	chr6	42958865	42984181
PEX6_chr6_42958865_42984181	0/0	c0014	2943	1	1	0	0	0	0	copy fasta	PEX6	chr6	42958865	42984181
PEX6_chr6_42958865_42984181	0/0	c0015	2943	1	0	0	1	0	0	copy fasta	PEX6	chr6	42958865	42984181
PEX6_chr6_42958865_42984181	0/0	c0016	2943	1	1	0	0	0	0	copy fasta	PEX6	chr6	42958865	42984181
PEX6_chr6_42958865_42984181	0/0	c0017	2943	1	0	0	1	0	0	copy fasta	PEX6	chr6	42958865	42984181
PEX6_chr6_42958865_42984181	0/0	c0018	2943	1	0	0	1	0	0	copy fasta	PEX6	chr6	42958865	42984181
PEX6_chr6_42958865_42984181	0/0	c0019	2943	1	0	1	0	0	0	copy fasta	PEX6	chr6	42958865	42984181
PEX6_chr6_42958865_42984181	0/0	c0020	2943	1	1	0	0	0	0	copy fasta	PEX6	chr6	42958865	42984181
PEX6_chr6_42958865_42984181	0/0	c0021	2943	1	0	1	0	0	0	copy fasta	PEX6	chr6	42958865	42984181
PEX6_chr6_42958865_42984181	0/0	c0022	2943	1	1	0	0	0	0	copy fasta	PEX6	chr6	42958865	42984181
PEX6_chr6_42958865_42984181	0/0	c0023	2943	1	0	0	0	1	0	copy fasta	PEX6	chr6	42958865	42984181
PEX6_chr6_42958865_42984181	0/0	c0024	2943	1	1	0	0	0	0	copy fasta	PEX6	chr6	42958865	42984181
PEX6_chr6_42958865_42984181	0/0	c0025	2954	1	0	0	1	0	0	copy fasta	PEX6	chr6	42958865	42984181
PEX6_chr6_42958865_42984181	0/0	c0026	2943	1	0	0	0	1	0	copy fasta	PEX6	chr6	42958865	42984181
PEX7_chr6_136817592_136918934	1/1	c0001	972	329	92	61	132	12	30	copy fasta	PEX7	chr6	136817592	136918934
PEX7_chr6_136817592_136918934	0/0	c0002	972	1	0	1	0	0	0	copy fasta	PEX7	chr6	136817592	136918934
PF4V1_chr4_73848296_73859483	1/1	c0001	315	404	80	66	208	13	35	copy fasta	PF4V1	chr4	73848296	73859483
PF4V1_chr4_73848296_73859483	0/0	c0002	315	42	16	5	15	3	3	copy fasta	PF4V1	chr4	73848296	73859483
PF4V1_chr4_73848296_73859483	0/0	c0003	315	1	0	1	0	0	0	copy fasta	PF4V1	chr4	73848296	73859483
PF4V1_chr4_73848296_73859483	0/0	c0004	315	1	0	0	1	0	0	copy fasta	PF4V1	chr4	73848296	73859483
PF4_chr4_73975811_73987027	1/1	c0001	306	356	84	62	154	12	42	copy fasta	PF4	chr4	73975811	73987027
PF4_chr4_73975811_73987027	0/0	c0002	306	10	10	0	0	0	0	copy fasta	PF4	chr4	73975811	73987027
PFAS_chr17_8244289_8275486	1/0	c0001	4017	115	24	16	66	2	6	copy fasta	PFAS	chr17	8244289	8275486
PFAS_chr17_8244289_8275486	0/1	c0002	4017	87	25	18	24	8	11	copy fasta	PFAS	chr17	8244289	8275486
PFAS_chr17_8244289_8275486	0/0	c0003	4017	81	0	17	55	1	8	copy fasta	PFAS	chr17	8244289	8275486
PFAS_chr17_8244289_8275486	0/0	c0004	4017	40	20	9	7	2	2	copy fasta	PFAS	chr17	8244289	8275486
PFAS_chr17_8244289_8275486	0/0	c0005	4017	13	10	2	1	0	0	copy fasta	PFAS	chr17	8244289	8275486
PFAS_chr17_8244289_8275486	0/0	c0006	4017	6	5	0	0	0	1	copy fasta	PFAS	chr17	8244289	8275486
PFAS_chr17_8244289_8275486	0/0	c0007	4017	5	0	4	0	1	0	copy fasta	PFAS	chr17	8244289	8275486
PFAS_chr17_8244289_8275486	0/0	c0008	4017	4	0	0	3	0	1	copy fasta	PFAS	chr17	8244289	8275486
PFAS_chr17_8244289_8275486	0/0	c0009	4017	3	0	1	0	2	0	copy fasta	PFAS	chr17	8244289	8275486
PFAS_chr17_8244289_8275486	0/0	c0010	4017	2	0	0	0	0	2	copy fasta	PFAS	chr17	8244289	8275486
PFAS_chr17_8244289_8275486	0/0	c0011	4017	2	0	1	0	0	1	copy fasta	PFAS	chr17	8244289	8275486
PFAS_chr17_8244289_8275486	0/0	c0012	4017	2	2	0	0	0	0	copy fasta	PFAS	chr17	8244289	8275486
PFAS_chr17_8244289_8275486	0/0	c0013	4017	2	0	0	0	0	2	copy fasta	PFAS	chr17	8244289	8275486
PFAS_chr17_8244289_8275486	0/0	c0014	4017	2	0	2	0	0	0	copy fasta	PFAS	chr17	8244289	8275486