JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PFAS_chr17_8244289_8275486	0/0	c0015	4017	1	0	0	0	0	1	copy fasta	PFAS	chr17	8244289	8275486
PFAS_chr17_8244289_8275486	0/0	c0016	4017	1	0	1	0	0	0	copy fasta	PFAS	chr17	8244289	8275486
PFAS_chr17_8244289_8275486	0/0	c0017	4017	1	0	0	0	0	1	copy fasta	PFAS	chr17	8244289	8275486
PFAS_chr17_8244289_8275486	0/0	c0018	4017	1	0	0	1	0	0	copy fasta	PFAS	chr17	8244289	8275486
PFAS_chr17_8244289_8275486	0/0	c0019	4017	1	0	0	1	0	0	copy fasta	PFAS	chr17	8244289	8275486
PFAS_chr17_8244289_8275486	0/0	c0020	4017	1	1	0	0	0	0	copy fasta	PFAS	chr17	8244289	8275486
PFAS_chr17_8244289_8275486	0/0	c0021	4017	1	0	0	1	0	0	copy fasta	PFAS	chr17	8244289	8275486
PFAS_chr17_8244289_8275486	0/0	c0022	4017	1	0	0	0	0	1	copy fasta	PFAS	chr17	8244289	8275486
PFAS_chr17_8244289_8275486	0/0	c0023	4017	1	0	1	0	0	0	copy fasta	PFAS	chr17	8244289	8275486
PFAS_chr17_8244289_8275486	0/0	c0024	4017	1	0	0	1	0	0	copy fasta	PFAS	chr17	8244289	8275486
PFAS_chr17_8244289_8275486	0/0	c0025	4017	1	0	0	1	0	0	copy fasta	PFAS	chr17	8244289	8275486
PFAS_chr17_8244289_8275486	0/0	c0026	4017	1	0	0	1	0	0	copy fasta	PFAS	chr17	8244289	8275486
PFAS_chr17_8244289_8275486	0/0	c0027	4017	1	0	0	1	0	0	copy fasta	PFAS	chr17	8244289	8275486
PFAS_chr17_8244289_8275486	0/0	c0028	4017	1	0	1	0	0	0	copy fasta	PFAS	chr17	8244289	8275486
PFAS_chr17_8244289_8275486	0/0	c0029	4017	1	0	1	0	0	0	copy fasta	PFAS	chr17	8244289	8275486
PFAS_chr17_8244289_8275486	0/0	c0030	4017	1	0	0	1	0	0	copy fasta	PFAS	chr17	8244289	8275486
PFAS_chr17_8244289_8275486	0/0	c0031	4017	1	0	0	1	0	0	copy fasta	PFAS	chr17	8244289	8275486
PFAS_chr17_8244289_8275486	0/0	c0032	4017	1	0	0	0	0	1	copy fasta	PFAS	chr17	8244289	8275486
PFAS_chr17_8244289_8275486	0/0	c0033	4017	1	0	0	1	0	0	copy fasta	PFAS	chr17	8244289	8275486
PFAS_chr17_8244289_8275486	0/0	c0034	4017	1	0	0	1	0	0	copy fasta	PFAS	chr17	8244289	8275486
PFAS_chr17_8244289_8275486	0/0	c0035	4017	1	0	1	0	0	0	copy fasta	PFAS	chr17	8244289	8275486
PFAS_chr17_8244289_8275486	0/0	c0036	4017	1	1	0	0	0	0	copy fasta	PFAS	chr17	8244289	8275486
PFAS_chr17_8244289_8275486	0/0	c0037	4017	1	0	1	0	0	0	copy fasta	PFAS	chr17	8244289	8275486
PFAS_chr17_8244289_8275486	0/0	c0038	4017	1	0	0	1	0	0	copy fasta	PFAS	chr17	8244289	8275486
PFDN1_chr5_140240035_140308101	1/1	c0001	369	319	84	53	136	12	32	copy fasta	PFDN1	chr5	140240035	140308101
PFDN1_chr5_140240035_140308101	0/0	c0002	369	6	0	0	6	0	0	copy fasta	PFDN1	chr5	140240035	140308101
PFDN1_chr5_140240035_140308101	0/0	c0003	369	5	0	3	0	0	2	copy fasta	PFDN1	chr5	140240035	140308101
PFDN2_chr1_161095561_161123037	1/1	c0001	465	369	72	65	180	18	32	copy fasta	PFDN2	chr1	161095561	161123037
PFDN2_chr1_161095561_161123037	0/0	c0002	465	1	0	1	0	0	0	copy fasta	PFDN2	chr1	161095561	161123037
PFDN4_chr20_54203087_54224961	1/1	c0001	405	433	85	76	208	16	46	copy fasta	PFDN4	chr20	54203087	54224961
PFDN4_chr20_54203087_54224961	0/0	c0002	405	3	3	0	0	0	0	copy fasta	PFDN4	chr20	54203087	54224961
PFDN4_chr20_54203087_54224961	0/0	c0003	405	2	2	0	0	0	0	copy fasta	PFDN4	chr20	54203087	54224961
PFDN5_chr12_53290542_53304450	1/1	c0001	465	381	91	76	170	10	32	copy fasta	PFDN5	chr12	53290542	53304450
PFDN5_chr12_53290542_53304450	0/0	c0002	465	1	1	0	0	0	0	copy fasta	PFDN5	chr12	53290542	53304450
PFDN6_chr6_33284601_33295933	0/1	c0001	390	386	89	68	170	18	40	copy fasta	PFDN6	chr6	33284601	33295933
PFDN6_chr6_33284601_33295933	0/0	c0002	390	11	9	2	0	0	0	copy fasta	PFDN6	chr6	33284601	33295933
PFDN6_chr6_33284601_33295933	0/0	c0003	390	2	0	2	0	0	0	copy fasta	PFDN6	chr6	33284601	33295933
PFKFB1_chrX_54927961_54999188	1/1	c0001	1416	218	68	38	82	8	20	copy fasta	PFKFB1	chrX	54927961	54999188
PFKFB1_chrX_54927961_54999188	0/0	c0002	1414	1	0	0	1	0	0	copy fasta	PFKFB1	chrX	54927961	54999188
PFKFB1_chrX_54927961_54999188	0/0	c0003	1416	1	0	1	0	0	0	copy fasta	PFKFB1	chrX	54927961	54999188
PFKFB1_chrX_54927961_54999188	0/0	c0004	1416	1	0	0	0	1	0	copy fasta	PFKFB1	chrX	54927961	54999188
PFKFB1_chrX_54927961_54999188	0/0	c0005	1417	1	0	0	1	0	0	copy fasta	PFKFB1	chrX	54927961	54999188
PFKFB2_chr1_207048275_207082817	1/1	c0001	1518	277	66	54	118	12	25	copy fasta	PFKFB2	chr1	207048275	207082817
PFKFB2_chr1_207048275_207082817	0/0	c0002	1518	31	28	1	2	0	0	copy fasta	PFKFB2	chr1	207048275	207082817
PFKFB2_chr1_207048275_207082817	0/0	c0003	1518	29	4	11	1	6	7	copy fasta	PFKFB2	chr1	207048275	207082817
PFKFB2_chr1_207048275_207082817	0/0	c0004	1518	2	1	1	0	0	0	copy fasta	PFKFB2	chr1	207048275	207082817
PFKFB2_chr1_207048275_207082817	0/0	c0005	1518	1	0	1	0	0	0	copy fasta	PFKFB2	chr1	207048275	207082817
PFKFB2_chr1_207048275_207082817	0/0	c0006	1518	1	1	0	0	0	0	copy fasta	PFKFB2	chr1	207048275	207082817
PFKFB2_chr1_207048275_207082817	0/0	c0007	1518	1	0	0	1	0	0	copy fasta	PFKFB2	chr1	207048275	207082817
PFKFB3_chr10_6197932_6240532	1/0	c0001	1563	362	55	80	177	18	31	copy fasta	PFKFB3	chr10	6197932	6240532