JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PFKFB3_chr10_6197932_6240532	0/0	c0002	1563	29	28	0	0	0	1	copy fasta	PFKFB3	chr10	6197932	6240532
PFKFB3_chr10_6197932_6240532	0/0	c0003	1563	22	4	0	6	0	12	copy fasta	PFKFB3	chr10	6197932	6240532
PFKFB3_chr10_6197932_6240532	0/0	c0004	1563	6	5	1	0	0	0	copy fasta	PFKFB3	chr10	6197932	6240532
PFKFB3_chr10_6197932_6240532	0/0	c0005	1563	4	0	1	3	0	0	copy fasta	PFKFB3	chr10	6197932	6240532
PFKFB3_chr10_6197932_6240532	0/0	c0006	1563	2	0	2	0	0	0	copy fasta	PFKFB3	chr10	6197932	6240532
PFKFB3_chr10_6197932_6240532	0/0	c0007	1563	2	2	0	0	0	0	copy fasta	PFKFB3	chr10	6197932	6240532
PFKFB3_chr10_6197932_6240532	0/0	c0008	1563	1	0	0	1	0	0	copy fasta	PFKFB3	chr10	6197932	6240532
PFKFB3_chr10_6197932_6240532	0/0	c0009	1563	1	1	0	0	0	0	copy fasta	PFKFB3	chr10	6197932	6240532
PFKFB3_chr10_6197932_6240532	0/0	c0010	1563	1	0	0	1	0	0	copy fasta	PFKFB3	chr10	6197932	6240532
PFKFB3_chr10_6197932_6240532	0/1	c0011	1563	1	0	0	0	0	0	copy fasta	PFKFB3	chr10	6197932	6240532
PFKFB3_chr10_6197932_6240532	0/0	c0012	1562	1	1	0	0	0	0	copy fasta	PFKFB3	chr10	6197932	6240532
PFKFB4_chr3_48512684_48561803	1/1	c0001	1410	243	74	32	96	14	25	copy fasta	PFKFB4	chr3	48512684	48561803
PFKFB4_chr3_48512684_48561803	0/0	c0002	1410	1	0	0	1	0	0	copy fasta	PFKFB4	chr3	48512684	48561803
PFKFB4_chr3_48512684_48561803	0/0	c0003	1410	1	0	0	0	0	1	copy fasta	PFKFB4	chr3	48512684	48561803
PFKFB4_chr3_48512684_48561803	0/0	c0004	1410	1	0	0	1	0	0	copy fasta	PFKFB4	chr3	48512684	48561803
PFKL_chr21_44295053_44332373	1/0	c0001	2343	190	53	25	92	7	12	copy fasta	PFKL	chr21	44295053	44332373
PFKL_chr21_44295053_44332373	0/1	c0002	2343	164	22	45	63	7	26	copy fasta	PFKL	chr21	44295053	44332373
PFKL_chr21_44295053_44332373	0/0	c0003	2343	24	12	7	1	0	4	copy fasta	PFKL	chr21	44295053	44332373
PFKL_chr21_44295053_44332373	0/0	c0004	2343	3	3	0	0	0	0	copy fasta	PFKL	chr21	44295053	44332373
PFKL_chr21_44295053_44332373	0/0	c0005	2343	2	0	0	0	0	2	copy fasta	PFKL	chr21	44295053	44332373
PFKL_chr21_44295053_44332373	0/0	c0006	2343	2	0	0	0	0	2	copy fasta	PFKL	chr21	44295053	44332373
PFKL_chr21_44295053_44332373	0/0	c0007	2343	1	1	0	0	0	0	copy fasta	PFKL	chr21	44295053	44332373
PFKL_chr21_44295053_44332373	0/0	c0008	2343	1	1	0	0	0	0	copy fasta	PFKL	chr21	44295053	44332373
PFKL_chr21_44295053_44332373	0/0	c0009	2343	1	0	0	1	0	0	copy fasta	PFKL	chr21	44295053	44332373
PFKL_chr21_44295053_44332373	0/0	c0010	2343	1	1	0	0	0	0	copy fasta	PFKL	chr21	44295053	44332373
PFKL_chr21_44295053_44332373	0/0	c0011	2343	1	0	0	1	0	0	copy fasta	PFKL	chr21	44295053	44332373
PFKL_chr21_44295053_44332373	0/0	c0012	2343	1	0	1	0	0	0	copy fasta	PFKL	chr21	44295053	44332373
PFKL_chr21_44295053_44332373	0/0	c0013	2343	1	1	0	0	0	0	copy fasta	PFKL	chr21	44295053	44332373
PFKM_chr12_48114364_48151404	1/1	c0001	2343	202	43	35	106	3	13	copy fasta	PFKM	chr12	48114364	48151404
PFKM_chr12_48114364_48151404	0/0	c0002	2343	90	36	12	34	4	4	copy fasta	PFKM	chr12	48114364	48151404
PFKM_chr12_48114364_48151404	0/0	c0003	2343	74	9	14	35	4	12	copy fasta	PFKM	chr12	48114364	48151404
PFKM_chr12_48114364_48151404	0/0	c0004	2343	39	9	13	1	3	13	copy fasta	PFKM	chr12	48114364	48151404
PFKM_chr12_48114364_48151404	0/0	c0005	2343	2	0	2	0	0	0	copy fasta	PFKM	chr12	48114364	48151404
PFKM_chr12_48114364_48151404	0/0	c0006	2343	2	0	0	2	0	0	copy fasta	PFKM	chr12	48114364	48151404
PFKM_chr12_48114364_48151404	0/0	c0007	2343	1	0	0	0	0	1	copy fasta	PFKM	chr12	48114364	48151404
PFKM_chr12_48114364_48151404	0/0	c0008	2343	1	1	0	0	0	0	copy fasta	PFKM	chr12	48114364	48151404
PFKM_chr12_48114364_48151404	0/0	c0009	2343	1	0	0	0	0	1	copy fasta	PFKM	chr12	48114364	48151404
PFKP_chr10_3062548_3141802	0/0	c0001	2355	70	12	13	37	1	7	copy fasta	PFKP	chr10	3062548	3141802
PFKP_chr10_3062548_3141802	0/0	c0002	2355	55	1	11	34	5	4	copy fasta	PFKP	chr10	3062548	3141802
PFKP_chr10_3062548_3141802	0/0	c0003	2355	55	3	6	42	1	3	copy fasta	PFKP	chr10	3062548	3141802
PFKP_chr10_3062548_3141802	0/0	c0004	2355	24	6	7	7	3	1	copy fasta	PFKP	chr10	3062548	3141802
PFKP_chr10_3062548_3141802	0/0	c0005	2355	21	4	3	8	1	5	copy fasta	PFKP	chr10	3062548	3141802
PFKP_chr10_3062548_3141802	0/0	c0006	2355	20	1	4	12	1	2	copy fasta	PFKP	chr10	3062548	3141802
PFKP_chr10_3062548_3141802	0/0	c0007	2355	17	7	0	5	0	5	copy fasta	PFKP	chr10	3062548	3141802
PFKP_chr10_3062548_3141802	0/0	c0008	2355	11	5	0	4	0	2	copy fasta	PFKP	chr10	3062548	3141802
PFKP_chr10_3062548_3141802	0/0	c0009	2355	10	1	4	2	1	2	copy fasta	PFKP	chr10	3062548	3141802
PFKP_chr10_3062548_3141802	0/0	c0010	2355	8	6	2	0	0	0	copy fasta	PFKP	chr10	3062548	3141802
PFKP_chr10_3062548_3141802	1/0	c0011	2355	7	5	1	0	0	0	copy fasta	PFKP	chr10	3062548	3141802
PFKP_chr10_3062548_3141802	0/0	c0012	2355	7	0	4	0	1	2	copy fasta	PFKP	chr10	3062548	3141802
PFKP_chr10_3062548_3141802	0/0	c0013	2355	6	0	3	0	0	3	copy fasta	PFKP	chr10	3062548	3141802