JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ARHGEF18_chr19_7343937_7477478	0/0	c0057	4086	1	1	0	0	0	0	copy fasta	ARHGEF18	chr19	7343937	7477478
ARHGEF19_chr1_16192854_16217652	1/1	c0001	2409	252	76	37	102	10	25	copy fasta	ARHGEF19	chr1	16192854	16217652
ARHGEF19_chr1_16192854_16217652	0/0	c0002	2409	78	8	26	25	3	16	copy fasta	ARHGEF19	chr1	16192854	16217652
ARHGEF19_chr1_16192854_16217652	0/0	c0003	2409	8	0	5	0	2	1	copy fasta	ARHGEF19	chr1	16192854	16217652
ARHGEF19_chr1_16192854_16217652	0/0	c0004	2409	7	5	2	0	0	0	copy fasta	ARHGEF19	chr1	16192854	16217652
ARHGEF19_chr1_16192854_16217652	0/0	c0005	2409	3	0	0	3	0	0	copy fasta	ARHGEF19	chr1	16192854	16217652
ARHGEF19_chr1_16192854_16217652	0/0	c0006	2409	3	0	0	3	0	0	copy fasta	ARHGEF19	chr1	16192854	16217652
ARHGEF19_chr1_16192854_16217652	0/0	c0007	2409	2	1	1	0	0	0	copy fasta	ARHGEF19	chr1	16192854	16217652
ARHGEF19_chr1_16192854_16217652	0/0	c0008	2409	2	0	0	2	0	0	copy fasta	ARHGEF19	chr1	16192854	16217652
ARHGEF19_chr1_16192854_16217652	0/0	c0009	2409	1	0	1	0	0	0	copy fasta	ARHGEF19	chr1	16192854	16217652
ARHGEF19_chr1_16192854_16217652	0/0	c0010	2409	1	0	0	1	0	0	copy fasta	ARHGEF19	chr1	16192854	16217652
ARHGEF19_chr1_16192854_16217652	0/0	c0011	2424	1	0	0	1	0	0	copy fasta	ARHGEF19	chr1	16192854	16217652
ARHGEF19_chr1_16192854_16217652	0/0	c0012	2409	1	1	0	0	0	0	copy fasta	ARHGEF19	chr1	16192854	16217652
ARHGEF19_chr1_16192854_16217652	0/0	c0013	2409	1	1	0	0	0	0	copy fasta	ARHGEF19	chr1	16192854	16217652
ARHGEF19_chr1_16192854_16217652	0/0	c0014	2409	1	0	0	1	0	0	copy fasta	ARHGEF19	chr1	16192854	16217652
ARHGEF19_chr1_16192854_16217652	0/0	c0015	2409	1	0	0	0	1	0	copy fasta	ARHGEF19	chr1	16192854	16217652
ARHGEF1_chr19_41878184_41912452	1/1	c0001	2739	140	18	37	57	7	19	copy fasta	ARHGEF1	chr19	41878184	41912452
ARHGEF1_chr19_41878184_41912452	0/0	c0002	2739	74	40	5	23	0	6	copy fasta	ARHGEF1	chr19	41878184	41912452
ARHGEF1_chr19_41878184_41912452	0/0	c0003	2739	7	7	0	0	0	0	copy fasta	ARHGEF1	chr19	41878184	41912452
ARHGEF1_chr19_41878184_41912452	0/0	c0004	2739	4	0	0	4	0	0	copy fasta	ARHGEF1	chr19	41878184	41912452
ARHGEF1_chr19_41878184_41912452	0/0	c0005	2724	1	0	1	0	0	0	copy fasta	ARHGEF1	chr19	41878184	41912452
ARHGEF1_chr19_41878184_41912452	0/0	c0006	2739	1	0	0	0	1	0	copy fasta	ARHGEF1	chr19	41878184	41912452
ARHGEF1_chr19_41878184_41912452	0/0	c0007	2739	1	0	0	1	0	0	copy fasta	ARHGEF1	chr19	41878184	41912452
ARHGEF1_chr19_41878184_41912452	0/0	c0008	2739	1	0	1	0	0	0	copy fasta	ARHGEF1	chr19	41878184	41912452
ARHGEF1_chr19_41878184_41912452	0/0	c0009	2739	1	0	1	0	0	0	copy fasta	ARHGEF1	chr19	41878184	41912452
ARHGEF1_chr19_41878184_41912452	0/0	c0010	2739	1	1	0	0	0	0	copy fasta	ARHGEF1	chr19	41878184	41912452
ARHGEF1_chr19_41878184_41912452	0/0	c0011	2739	1	0	0	0	0	1	copy fasta	ARHGEF1	chr19	41878184	41912452
ARHGEF1_chr19_41878184_41912452	0/0	c0012	2739	1	0	1	0	0	0	copy fasta	ARHGEF1	chr19	41878184	41912452
ARHGEF1_chr19_41878184_41912452	0/0	c0013	2739	1	0	0	1	0	0	copy fasta	ARHGEF1	chr19	41878184	41912452
ARHGEF25_chr12_57606435_57622245	0/0	c0001	1743	166	29	24	92	3	18	copy fasta	ARHGEF25	chr12	57606435	57622245
ARHGEF25_chr12_57606435_57622245	1/1	c0002	1743	127	39	24	38	6	18	copy fasta	ARHGEF25	chr12	57606435	57622245
ARHGEF25_chr12_57606435_57622245	0/0	c0003	1743	38	2	5	22	3	6	copy fasta	ARHGEF25	chr12	57606435	57622245
ARHGEF25_chr12_57606435_57622245	0/0	c0004	1743	32	4	16	10	2	0	copy fasta	ARHGEF25	chr12	57606435	57622245
ARHGEF25_chr12_57606435_57622245	0/0	c0005	1743	22	9	0	12	0	1	copy fasta	ARHGEF25	chr12	57606435	57622245
ARHGEF25_chr12_57606435_57622245	0/0	c0006	1743	21	5	8	8	0	0	copy fasta	ARHGEF25	chr12	57606435	57622245
ARHGEF25_chr12_57606435_57622245	0/0	c0007	1743	5	0	0	5	0	0	copy fasta	ARHGEF25	chr12	57606435	57622245
ARHGEF25_chr12_57606435_57622245	0/0	c0008	1743	4	4	0	0	0	0	copy fasta	ARHGEF25	chr12	57606435	57622245
ARHGEF25_chr12_57606435_57622245	0/0	c0009	1743	4	3	1	0	0	0	copy fasta	ARHGEF25	chr12	57606435	57622245
ARHGEF25_chr12_57606435_57622245	0/0	c0010	1743	1	1	0	0	0	0	copy fasta	ARHGEF25	chr12	57606435	57622245
ARHGEF25_chr12_57606435_57622245	0/0	c0011	1743	1	1	0	0	0	0	copy fasta	ARHGEF25	chr12	57606435	57622245
ARHGEF25_chr12_57606435_57622245	0/0	c0012	1743	1	0	0	1	0	0	copy fasta	ARHGEF25	chr12	57606435	57622245
ARHGEF25_chr12_57606435_57622245	0/0	c0013	1743	1	0	0	0	0	1	copy fasta	ARHGEF25	chr12	57606435	57622245
ARHGEF25_chr12_57606435_57622245	0/0	c0014	1743	1	1	0	0	0	0	copy fasta	ARHGEF25	chr12	57606435	57622245
ARHGEF26_chr3_154116390_154262825	0/1	c0001	2616	151	32	31	61	11	15	copy fasta	ARHGEF26	chr3	154116390	154262825
ARHGEF26_chr3_154116390_154262825	0/0	c0002	2616	64	5	9	40	3	7	copy fasta	ARHGEF26	chr3	154116390	154262825
ARHGEF26_chr3_154116390_154262825	0/0	c0003	2616	38	16	3	18	0	1	copy fasta	ARHGEF26	chr3	154116390	154262825
ARHGEF26_chr3_154116390_154262825	0/0	c0004	2616	10	2	7	0	1	0	copy fasta	ARHGEF26	chr3	154116390	154262825
ARHGEF26_chr3_154116390_154262825	0/0	c0005	2616	3	2	1	0	0	0	copy fasta	ARHGEF26	chr3	154116390	154262825
ARHGEF26_chr3_154116390_154262825	0/0	c0006	2616	2	2	0	0	0	0	copy fasta	ARHGEF26	chr3	154116390	154262825
ARHGEF26_chr3_154116390_154262825	0/0	c0007	2616	2	2	0	0	0	0	copy fasta	ARHGEF26	chr3	154116390	154262825