JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PFKP_chr10_3062548_3141802	0/0	c0014	2355	6	4	0	1	0	1	copy fasta	PFKP	chr10	3062548	3141802
PFKP_chr10_3062548_3141802	0/0	c0015	2355	5	1	1	0	2	1	copy fasta	PFKP	chr10	3062548	3141802
PFKP_chr10_3062548_3141802	0/0	c0016	2355	4	2	1	0	0	1	copy fasta	PFKP	chr10	3062548	3141802
PFKP_chr10_3062548_3141802	0/0	c0017	2355	4	3	1	0	0	0	copy fasta	PFKP	chr10	3062548	3141802
PFKP_chr10_3062548_3141802	0/0	c0018	2355	4	1	3	0	0	0	copy fasta	PFKP	chr10	3062548	3141802
PFKP_chr10_3062548_3141802	0/0	c0019	2355	3	0	2	0	0	1	copy fasta	PFKP	chr10	3062548	3141802
PFKP_chr10_3062548_3141802	0/1	c0020	2355	3	0	2	0	0	0	copy fasta	PFKP	chr10	3062548	3141802
PFKP_chr10_3062548_3141802	0/0	c0021	2355	3	0	0	3	0	0	copy fasta	PFKP	chr10	3062548	3141802
PFKP_chr10_3062548_3141802	0/0	c0022	2355	3	0	0	3	0	0	copy fasta	PFKP	chr10	3062548	3141802
PFKP_chr10_3062548_3141802	0/0	c0023	2355	2	2	0	0	0	0	copy fasta	PFKP	chr10	3062548	3141802
PFKP_chr10_3062548_3141802	0/0	c0024	2355	2	2	0	0	0	0	copy fasta	PFKP	chr10	3062548	3141802
PFKP_chr10_3062548_3141802	0/0	c0025	2355	2	2	0	0	0	0	copy fasta	PFKP	chr10	3062548	3141802
PFKP_chr10_3062548_3141802	0/0	c0026	2355	2	2	0	0	0	0	copy fasta	PFKP	chr10	3062548	3141802
PFKP_chr10_3062548_3141802	0/0	c0027	2355	2	0	1	0	0	1	copy fasta	PFKP	chr10	3062548	3141802
PFKP_chr10_3062548_3141802	0/0	c0028	2355	2	1	0	0	0	1	copy fasta	PFKP	chr10	3062548	3141802
PFKP_chr10_3062548_3141802	0/0	c0029	2355	2	0	0	1	0	1	copy fasta	PFKP	chr10	3062548	3141802
PFKP_chr10_3062548_3141802	0/0	c0030	2355	2	0	0	2	0	0	copy fasta	PFKP	chr10	3062548	3141802
PFKP_chr10_3062548_3141802	0/0	c0031	2355	2	0	2	0	0	0	copy fasta	PFKP	chr10	3062548	3141802
PFKP_chr10_3062548_3141802	0/0	c0032	2355	2	0	2	0	0	0	copy fasta	PFKP	chr10	3062548	3141802
PFKP_chr10_3062548_3141802	0/0	c0033	2355	1	0	1	0	0	0	copy fasta	PFKP	chr10	3062548	3141802
PFKP_chr10_3062548_3141802	0/0	c0034	2355	1	1	0	0	0	0	copy fasta	PFKP	chr10	3062548	3141802
PFKP_chr10_3062548_3141802	0/0	c0035	2355	1	1	0	0	0	0	copy fasta	PFKP	chr10	3062548	3141802
PFKP_chr10_3062548_3141802	0/0	c0036	2355	1	1	0	0	0	0	copy fasta	PFKP	chr10	3062548	3141802
PFKP_chr10_3062548_3141802	0/0	c0037	2355	1	0	0	0	0	1	copy fasta	PFKP	chr10	3062548	3141802
PFKP_chr10_3062548_3141802	0/0	c0038	2355	1	1	0	0	0	0	copy fasta	PFKP	chr10	3062548	3141802
PFKP_chr10_3062548_3141802	0/0	c0039	2355	1	0	0	1	0	0	copy fasta	PFKP	chr10	3062548	3141802
PFKP_chr10_3062548_3141802	0/0	c0040	2355	1	1	0	0	0	0	copy fasta	PFKP	chr10	3062548	3141802
PFKP_chr10_3062548_3141802	0/0	c0041	2355	1	1	0	0	0	0	copy fasta	PFKP	chr10	3062548	3141802
PFKP_chr10_3062548_3141802	0/0	c0042	2355	1	0	1	0	0	0	copy fasta	PFKP	chr10	3062548	3141802
PFKP_chr10_3062548_3141802	0/0	c0043	2355	1	0	1	0	0	0	copy fasta	PFKP	chr10	3062548	3141802
PFKP_chr10_3062548_3141802	0/0	c0044	2355	1	1	0	0	0	0	copy fasta	PFKP	chr10	3062548	3141802
PFKP_chr10_3062548_3141802	0/0	c0045	2355	1	1	0	0	0	0	copy fasta	PFKP	chr10	3062548	3141802
PFKP_chr10_3062548_3141802	0/0	c0046	2355	1	0	0	1	0	0	copy fasta	PFKP	chr10	3062548	3141802
PFKP_chr10_3062548_3141802	0/0	c0047	2355	1	1	0	0	0	0	copy fasta	PFKP	chr10	3062548	3141802
PFKP_chr10_3062548_3141802	0/0	c0048	2355	1	1	0	0	0	0	copy fasta	PFKP	chr10	3062548	3141802
PFKP_chr10_3062548_3141802	0/0	c0049	2355	1	0	1	0	0	0	copy fasta	PFKP	chr10	3062548	3141802
PFKP_chr10_3062548_3141802	0/0	c0050	2355	1	0	0	1	0	0	copy fasta	PFKP	chr10	3062548	3141802
PFKP_chr10_3062548_3141802	0/0	c0051	2355	1	0	0	1	0	0	copy fasta	PFKP	chr10	3062548	3141802
PFKP_chr10_3062548_3141802	0/0	c0052	2355	1	0	0	1	0	0	copy fasta	PFKP	chr10	3062548	3141802
PFKP_chr10_3062548_3141802	0/0	c0053	2355	1	0	0	1	0	0	copy fasta	PFKP	chr10	3062548	3141802
PFKP_chr10_3062548_3141802	0/0	c0054	2355	1	0	0	0	0	1	copy fasta	PFKP	chr10	3062548	3141802
PFKP_chr10_3062548_3141802	0/0	c0055	2355	1	1	0	0	0	0	copy fasta	PFKP	chr10	3062548	3141802
PFKP_chr10_3062548_3141802	0/0	c0056	2355	1	1	0	0	0	0	copy fasta	PFKP	chr10	3062548	3141802
PFKP_chr10_3062548_3141802	0/0	c0057	2355	1	1	0	0	0	0	copy fasta	PFKP	chr10	3062548	3141802
PFKP_chr10_3062548_3141802	0/0	c0058	2355	1	1	0	0	0	0	copy fasta	PFKP	chr10	3062548	3141802
PFKP_chr10_3062548_3141802	0/0	c0059	2355	1	1	0	0	0	0	copy fasta	PFKP	chr10	3062548	3141802
PFKP_chr10_3062548_3141802	0/0	c0060	2355	1	1	0	0	0	0	copy fasta	PFKP	chr10	3062548	3141802
PFKP_chr10_3062548_3141802	0/0	c0061	2355	1	0	1	0	0	0	copy fasta	PFKP	chr10	3062548	3141802
PFKP_chr10_3062548_3141802	0/0	c0062	2355	1	0	0	0	0	1	copy fasta	PFKP	chr10	3062548	3141802
PFKP_chr10_3062548_3141802	0/0	c0063	2355	1	0	1	0	0	0	copy fasta	PFKP	chr10	3062548	3141802