JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PFKP_chr10_3062548_3141802	0/0	c0064	2355	1	0	1	0	0	0	copy fasta	PFKP	chr10	3062548	3141802
PFKP_chr10_3062548_3141802	0/0	c0065	2355	1	1	0	0	0	0	copy fasta	PFKP	chr10	3062548	3141802
PFKP_chr10_3062548_3141802	0/0	c0066	2355	1	1	0	0	0	0	copy fasta	PFKP	chr10	3062548	3141802
PFKP_chr10_3062548_3141802	0/0	c0067	2355	1	1	0	0	0	0	copy fasta	PFKP	chr10	3062548	3141802
PFKP_chr10_3062548_3141802	0/0	c0068	2355	1	0	0	1	0	0	copy fasta	PFKP	chr10	3062548	3141802
PFN1_chr17_4940652_4953530	1/1	c0001	423	376	90	75	154	14	41	copy fasta	PFN1	chr17	4940652	4953530
PFN1_chr17_4940652_4953530	0/0	c0002	423	54	0	9	42	0	3	copy fasta	PFN1	chr17	4940652	4953530
PFN1_chr17_4940652_4953530	0/0	c0003	423	2	0	0	2	0	0	copy fasta	PFN1	chr17	4940652	4953530
PFN2_chr3_149959904_149975895	1/1	c0001	423	433	94	80	195	16	46	copy fasta	PFN2	chr3	149959904	149975895
PFN2_chr3_149959904_149975895	0/0	c0002	423	1	0	0	1	0	0	copy fasta	PFN2	chr3	149959904	149975895
PFN3_chr5_177395109_177405661	1/1	c0001	414	414	93	74	182	16	47	copy fasta	PFN3	chr5	177395109	177405661
PFN3_chr5_177395109_177405661	0/0	c0002	414	1	1	0	0	0	0	copy fasta	PFN3	chr5	177395109	177405661
PFN3_chr5_177395109_177405661	0/0	c0003	414	1	0	0	0	0	1	copy fasta	PFN3	chr5	177395109	177405661
PFN4_chr2_24109809_24128334	1/0	c0001	390	261	54	51	125	11	19	copy fasta	PFN4	chr2	24109809	24128334
PFN4_chr2_24109809_24128334	0/1	c0002	390	51	12	9	15	4	10	copy fasta	PFN4	chr2	24109809	24128334
PFN4_chr2_24109809_24128334	0/0	c0003	390	46	10	6	16	3	11	copy fasta	PFN4	chr2	24109809	24128334
PGA3_chr11_61198515_61218098	0/0	c0000	0	1	1	0	0	0	0	copy fasta	PGA3	chr11	61198515	61218098
PGA3_chr11_61198515_61218098	0/0	c0001	1167	199	43	37	81	7	31	copy fasta	PGA3	chr11	61198515	61218098
PGA3_chr11_61198515_61218098	0/0	c0002	1167	58	24	21	5	2	6	copy fasta	PGA3	chr11	61198515	61218098
PGA3_chr11_61198515_61218098	1/0	c0003	1167	11	4	2	2	1	1	copy fasta	PGA3	chr11	61198515	61218098
PGA3_chr11_61198515_61218098	0/0	c0004	1167	7	0	0	7	0	0	copy fasta	PGA3	chr11	61198515	61218098
PGA3_chr11_61198515_61218098	0/0	c0005	1167	5	3	1	1	0	0	copy fasta	PGA3	chr11	61198515	61218098
PGA3_chr11_61198515_61218098	0/0	c0006	1167	5	0	3	2	0	0	copy fasta	PGA3	chr11	61198515	61218098
PGA3_chr11_61198515_61218098	0/0	c0007	1167	4	4	0	0	0	0	copy fasta	PGA3	chr11	61198515	61218098
PGA3_chr11_61198515_61218098	0/0	c0008	1167	3	0	1	2	0	0	copy fasta	PGA3	chr11	61198515	61218098
PGA3_chr11_61198515_61218098	0/0	c0009	1167	3	3	0	0	0	0	copy fasta	PGA3	chr11	61198515	61218098
PGA3_chr11_61198515_61218098	0/0	c0010	1167	3	3	0	0	0	0	copy fasta	PGA3	chr11	61198515	61218098
PGA3_chr11_61198515_61218098	0/0	c0011	1167	2	2	0	0	0	0	copy fasta	PGA3	chr11	61198515	61218098
PGA3_chr11_61198515_61218098	0/0	c0012	219	1	0	1	0	0	0	copy fasta	PGA3	chr11	61198515	61218098
PGA3_chr11_61198515_61218098	0/0	c0013	1167	1	0	0	1	0	0	copy fasta	PGA3	chr11	61198515	61218098
PGA3_chr11_61198515_61218098	0/0	c0014	1167	1	0	0	1	0	0	copy fasta	PGA3	chr11	61198515	61218098
PGA3_chr11_61198515_61218098	0/0	c0015	1167	1	1	0	0	0	0	copy fasta	PGA3	chr11	61198515	61218098
PGA3_chr11_61198515_61218098	0/0	c0016	1167	1	1	0	0	0	0	copy fasta	PGA3	chr11	61198515	61218098
PGA3_chr11_61198515_61218098	0/0	c0017	1167	1	1	0	0	0	0	copy fasta	PGA3	chr11	61198515	61218098
PGA3_chr11_61198515_61218098	0/0	c0018	1167	1	1	0	0	0	0	copy fasta	PGA3	chr11	61198515	61218098
PGA3_chr11_61198515_61218098	0/0	c0019	1167	1	1	0	0	0	0	copy fasta	PGA3	chr11	61198515	61218098
PGA3_chr11_61198515_61218098	0/0	c0020	1167	1	1	0	0	0	0	copy fasta	PGA3	chr11	61198515	61218098
PGA3_chr11_61198515_61218098	0/0	c0021	1167	1	1	0	0	0	0	copy fasta	PGA3	chr11	61198515	61218098
PGA4_chr11_61217347_61236694	0/0	c0000	0	12	3	3	1	1	4	copy fasta	PGA4	chr11	61217347	61236694
PGA4_chr11_61217347_61236694	0/0	c0001	1167	248	60	47	103	7	31	copy fasta	PGA4	chr11	61217347	61236694
PGA4_chr11_61217347_61236694	0/0	c0002	1167	9	0	0	9	0	0	copy fasta	PGA4	chr11	61217347	61236694
PGA4_chr11_61217347_61236694	0/0	c0003	1167	8	5	1	2	0	0	copy fasta	PGA4	chr11	61217347	61236694
PGA4_chr11_61217347_61236694	0/0	c0004	1167	4	2	0	0	0	2	copy fasta	PGA4	chr11	61217347	61236694
PGA4_chr11_61217347_61236694	0/0	c0005	1167	4	4	0	0	0	0	copy fasta	PGA4	chr11	61217347	61236694
PGA4_chr11_61217347_61236694	0/0	c0006	1167	3	3	0	0	0	0	copy fasta	PGA4	chr11	61217347	61236694
PGA4_chr11_61217347_61236694	0/0	c0007	1167	2	0	0	2	0	0	copy fasta	PGA4	chr11	61217347	61236694
PGA4_chr11_61217347_61236694	0/0	c0008	1167	1	0	0	0	0	1	copy fasta	PGA4	chr11	61217347	61236694
PGA4_chr11_61217347_61236694	0/0	c0009	219	1	1	0	0	0	0	copy fasta	PGA4	chr11	61217347	61236694
PGA4_chr11_61217347_61236694	0/0	c0010	1167	1	0	1	0	0	0	copy fasta	PGA4	chr11	61217347	61236694
PGA4_chr11_61217347_61236694	0/0	c0011	1167	1	0	0	1	0	0	copy fasta	PGA4	chr11	61217347	61236694