JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PGA4_chr11_61217347_61236694	0/0	c0012	1167	1	0	1	0	0	0	copy fasta	PGA4	chr11	61217347	61236694
PGA4_chr11_61217347_61236694	0/0	c0013	1167	1	0	0	1	0	0	copy fasta	PGA4	chr11	61217347	61236694
PGA4_chr11_61217347_61236694	0/0	c0014	1167	1	1	0	0	0	0	copy fasta	PGA4	chr11	61217347	61236694
PGA4_chr11_61217347_61236694	0/0	c0015	1167	1	1	0	0	0	0	copy fasta	PGA4	chr11	61217347	61236694
PGA4_chr11_61217347_61236694	0/0	c0016	1017	1	1	0	0	0	0	copy fasta	PGA4	chr11	61217347	61236694
PGA4_chr11_61217347_61236694	0/0	c0017	1167	1	1	0	0	0	0	copy fasta	PGA4	chr11	61217347	61236694
PGA4_chr11_61217347_61236694	0/0	c0018	1167	1	1	0	0	0	0	copy fasta	PGA4	chr11	61217347	61236694
PGA4_chr11_61217347_61236694	0/0	c0019	1167	1	0	0	1	0	0	copy fasta	PGA4	chr11	61217347	61236694
PGA4_chr11_61217347_61236694	0/0	c0020	1167	1	1	0	0	0	0	copy fasta	PGA4	chr11	61217347	61236694
PGA4_chr11_61217347_61236694	0/0	c0021	1167	1	0	1	0	0	0	copy fasta	PGA4	chr11	61217347	61236694
PGA5_chr11_61236175_61256444	1/1	c0001	1167	294	25	65	156	12	34	copy fasta	PGA5	chr11	61236175	61256444
PGA5_chr11_61236175_61256444	0/0	c0002	1167	20	12	2	4	0	2	copy fasta	PGA5	chr11	61236175	61256444
PGA5_chr11_61236175_61256444	0/0	c0003	1167	16	14	2	0	0	0	copy fasta	PGA5	chr11	61236175	61256444
PGA5_chr11_61236175_61256444	0/0	c0004	1167	15	14	0	0	0	1	copy fasta	PGA5	chr11	61236175	61256444
PGA5_chr11_61236175_61256444	0/0	c0005	1167	14	11	0	0	0	3	copy fasta	PGA5	chr11	61236175	61256444
PGA5_chr11_61236175_61256444	0/0	c0006	1167	10	0	0	10	0	0	copy fasta	PGA5	chr11	61236175	61256444
PGA5_chr11_61236175_61256444	0/0	c0007	1167	5	5	0	0	0	0	copy fasta	PGA5	chr11	61236175	61256444
PGA5_chr11_61236175_61256444	0/0	c0008	1167	3	0	3	0	0	0	copy fasta	PGA5	chr11	61236175	61256444
PGA5_chr11_61236175_61256444	0/0	c0009	1167	3	3	0	0	0	0	copy fasta	PGA5	chr11	61236175	61256444
PGA5_chr11_61236175_61256444	0/0	c0010	1167	2	2	0	0	0	0	copy fasta	PGA5	chr11	61236175	61256444
PGA5_chr11_61236175_61256444	0/0	c0011	1167	2	2	0	0	0	0	copy fasta	PGA5	chr11	61236175	61256444
PGA5_chr11_61236175_61256444	0/0	c0012	1167	1	1	0	0	0	0	copy fasta	PGA5	chr11	61236175	61256444
PGA5_chr11_61236175_61256444	0/0	c0013	1167	1	1	0	0	0	0	copy fasta	PGA5	chr11	61236175	61256444
PGA5_chr11_61236175_61256444	0/0	c0014	1167	1	0	0	1	0	0	copy fasta	PGA5	chr11	61236175	61256444
PGA5_chr11_61236175_61256444	0/0	c0015	1167	1	0	1	0	0	0	copy fasta	PGA5	chr11	61236175	61256444
PGA5_chr11_61236175_61256444	0/0	c0016	1167	1	0	1	0	0	0	copy fasta	PGA5	chr11	61236175	61256444
PGA5_chr11_61236175_61256444	0/0	c0017	1167	1	0	0	0	0	1	copy fasta	PGA5	chr11	61236175	61256444
PGA5_chr11_61236175_61256444	0/0	c0018	1167	1	0	0	0	0	1	copy fasta	PGA5	chr11	61236175	61256444
PGA5_chr11_61236175_61256444	0/0	c0019	1167	1	0	0	0	0	1	copy fasta	PGA5	chr11	61236175	61256444
PGA5_chr11_61236175_61256444	0/0	c0020	1167	1	0	0	1	0	0	copy fasta	PGA5	chr11	61236175	61256444
PGA5_chr11_61236175_61256444	0/0	c0021	1167	1	1	0	0	0	0	copy fasta	PGA5	chr11	61236175	61256444
PGA5_chr11_61236175_61256444	0/0	c0022	1167	1	0	0	1	0	0	copy fasta	PGA5	chr11	61236175	61256444
PGA5_chr11_61236175_61256444	0/0	c0023	1167	1	1	0	0	0	0	copy fasta	PGA5	chr11	61236175	61256444
PGA5_chr11_61236175_61256444	0/0	c0024	1167	1	0	0	1	0	0	copy fasta	PGA5	chr11	61236175	61256444
PGA5_chr11_61236175_61256444	0/0	c0025	1167	1	0	0	0	0	1	copy fasta	PGA5	chr11	61236175	61256444
PGA5_chr11_61236175_61256444	0/0	c0026	1167	1	0	0	0	0	1	copy fasta	PGA5	chr11	61236175	61256444
PGA5_chr11_61236175_61256444	0/0	c0027	1167	1	0	0	1	0	0	copy fasta	PGA5	chr11	61236175	61256444
PGA5_chr11_61236175_61256444	0/0	c0028	1167	1	1	0	0	0	0	copy fasta	PGA5	chr11	61236175	61256444
PGA5_chr11_61236175_61256444	0/0	c0029	1167	1	1	0	0	0	0	copy fasta	PGA5	chr11	61236175	61256444
PGA5_chr11_61236175_61256444	0/0	c0030	1167	1	0	0	1	0	0	copy fasta	PGA5	chr11	61236175	61256444
PGA5_chr11_61236175_61256444	0/0	c0031	1167	1	0	0	0	0	1	copy fasta	PGA5	chr11	61236175	61256444
PGA5_chr11_61236175_61256444	0/0	c0032	1167	1	1	0	0	0	0	copy fasta	PGA5	chr11	61236175	61256444
PGA5_chr11_61236175_61256444	0/0	c0033	1167	1	1	0	0	0	0	copy fasta	PGA5	chr11	61236175	61256444
PGAM1_chr10_97421191_97438444	1/1	c0001	765	431	85	76	207	16	45	copy fasta	PGAM1	chr10	97421191	97438444
PGAM1_chr10_97421191_97438444	0/0	c0002	765	3	3	0	0	0	0	copy fasta	PGAM1	chr10	97421191	97438444
PGAM1_chr10_97421191_97438444	0/0	c0003	765	1	1	0	0	0	0	copy fasta	PGAM1	chr10	97421191	97438444
PGAM1_chr10_97421191_97438444	0/0	c0004	765	1	0	0	0	0	1	copy fasta	PGAM1	chr10	97421191	97438444
PGAM1_chr10_97421191_97438444	0/0	c0005	765	1	0	0	1	0	0	copy fasta	PGAM1	chr10	97421191	97438444
PGAM1_chr10_97421191_97438444	0/0	c0006	765	1	1	0	0	0	0	copy fasta	PGAM1	chr10	97421191	97438444
PGAM2_chr7_44057727_44070567	1/1	c0001	762	355	71	73	158	14	37	copy fasta	PGAM2	chr7	44057727	44070567