JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PGAM2_chr7_44057727_44070567	0/0	c0002	762	22	11	3	5	0	3	copy fasta	PGAM2	chr7	44057727	44070567
PGAM2_chr7_44057727_44070567	0/0	c0003	762	11	11	0	0	0	0	copy fasta	PGAM2	chr7	44057727	44070567
PGAM2_chr7_44057727_44070567	0/0	c0004	762	3	0	0	3	0	0	copy fasta	PGAM2	chr7	44057727	44070567
PGAM2_chr7_44057727_44070567	0/0	c0005	762	3	0	3	0	0	0	copy fasta	PGAM2	chr7	44057727	44070567
PGAM2_chr7_44057727_44070567	0/0	c0006	762	2	2	0	0	0	0	copy fasta	PGAM2	chr7	44057727	44070567
PGAM2_chr7_44057727_44070567	0/0	c0007	762	2	0	0	0	2	0	copy fasta	PGAM2	chr7	44057727	44070567
PGAM2_chr7_44057727_44070567	0/0	c0008	762	1	0	1	0	0	0	copy fasta	PGAM2	chr7	44057727	44070567
PGAM2_chr7_44057727_44070567	0/0	c0009	762	1	1	0	0	0	0	copy fasta	PGAM2	chr7	44057727	44070567
PGAM4_chrX_77962949_77974638	1/1	c0001	765	294	54	62	135	9	32	copy fasta	PGAM4	chrX	77962949	77974638
PGAM4_chrX_77962949_77974638	0/0	c0002	765	14	14	0	0	0	0	copy fasta	PGAM4	chrX	77962949	77974638
PGAM4_chrX_77962949_77974638	0/0	c0003	765	4	4	0	0	0	0	copy fasta	PGAM4	chrX	77962949	77974638
PGAM4_chrX_77962949_77974638	0/0	c0004	765	2	0	0	2	0	0	copy fasta	PGAM4	chrX	77962949	77974638
PGAM4_chrX_77962949_77974638	0/0	c0005	765	1	0	1	0	0	0	copy fasta	PGAM4	chrX	77962949	77974638
PGAM4_chrX_77962949_77974638	0/0	c0006	765	1	0	0	1	0	0	copy fasta	PGAM4	chrX	77962949	77974638
PGAM4_chrX_77962949_77974638	0/0	c0007	765	1	0	1	0	0	0	copy fasta	PGAM4	chrX	77962949	77974638
PGAM4_chrX_77962949_77974638	0/0	c0008	766	1	0	0	1	0	0	copy fasta	PGAM4	chrX	77962949	77974638
PGAM4_chrX_77962949_77974638	0/0	c0009	765	1	0	0	1	0	0	copy fasta	PGAM4	chrX	77962949	77974638
PGAM4_chrX_77962949_77974638	0/0	c0010	765	1	0	0	1	0	0	copy fasta	PGAM4	chrX	77962949	77974638
PGAM5_chr12_132705842_132727734	1/1	c0001	870	350	80	73	135	15	45	copy fasta	PGAM5	chr12	132705842	132727734
PGAM5_chr12_132705842_132727734	0/0	c0002	870	24	0	5	16	1	2	copy fasta	PGAM5	chr12	132705842	132727734
PGAM5_chr12_132705842_132727734	0/0	c0003	870	8	0	6	0	2	0	copy fasta	PGAM5	chr12	132705842	132727734
PGAM5_chr12_132705842_132727734	0/0	c0004	870	4	4	0	0	0	0	copy fasta	PGAM5	chr12	132705842	132727734
PGAM5_chr12_132705842_132727734	0/0	c0005	870	3	3	0	0	0	0	copy fasta	PGAM5	chr12	132705842	132727734
PGAM5_chr12_132705842_132727734	0/0	c0006	870	1	0	0	1	0	0	copy fasta	PGAM5	chr12	132705842	132727734
PGAM5_chr12_132705842_132727734	0/0	c0007	870	1	0	0	1	0	0	copy fasta	PGAM5	chr12	132705842	132727734
PGAM5_chr12_132705842_132727734	0/0	c0008	870	1	1	0	0	0	0	copy fasta	PGAM5	chr12	132705842	132727734
PGAM5_chr12_132705842_132727734	0/0	c0009	870	1	0	0	0	0	1	copy fasta	PGAM5	chr12	132705842	132727734
PGAM5_chr12_132705842_132727734	0/0	c0010	870	1	0	0	1	0	0	copy fasta	PGAM5	chr12	132705842	132727734
PGAP1_chr2_196828004_196931707	1/1	c0001	2769	174	66	34	39	6	27	copy fasta	PGAP1	chr2	196828004	196931707
PGAP1_chr2_196828004_196931707	0/0	c0002	2769	5	5	0	0	0	0	copy fasta	PGAP1	chr2	196828004	196931707
PGAP1_chr2_196828004_196931707	0/0	c0003	2769	5	5	0	0	0	0	copy fasta	PGAP1	chr2	196828004	196931707
PGAP1_chr2_196828004_196931707	0/0	c0004	2769	2	2	0	0	0	0	copy fasta	PGAP1	chr2	196828004	196931707
PGAP1_chr2_196828004_196931707	0/0	c0005	2769	1	0	0	1	0	0	copy fasta	PGAP1	chr2	196828004	196931707
PGAP1_chr2_196828004_196931707	0/0	c0006	2769	1	0	0	0	0	1	copy fasta	PGAP1	chr2	196828004	196931707
PGAP2_chr11_3803560_3831371	1/1	c0001	948	412	96	76	174	18	46	copy fasta	PGAP2	chr11	3803560	3831371
PGAP2_chr11_3803560_3831371	0/0	c0002	948	2	2	0	0	0	0	copy fasta	PGAP2	chr11	3803560	3831371
PGAP2_chr11_3803560_3831371	0/0	c0003	886	1	0	0	1	0	0	copy fasta	PGAP2	chr11	3803560	3831371
PGAP2_chr11_3803560_3831371	0/0	c0004	948	1	0	0	1	0	0	copy fasta	PGAP2	chr11	3803560	3831371
PGAP2_chr11_3803560_3831371	0/0	c0005	948	1	0	0	1	0	0	copy fasta	PGAP2	chr11	3803560	3831371
PGAP2_chr11_3803560_3831371	0/0	c0006	948	1	0	0	1	0	0	copy fasta	PGAP2	chr11	3803560	3831371
PGAP3_chr17_39666122_39693057	0/0	c0001	963	210	56	46	80	9	19	copy fasta	PGAP3	chr17	39666122	39693057
PGAP3_chr17_39666122_39693057	1/1	c0002	963	152	37	27	65	5	16	copy fasta	PGAP3	chr17	39666122	39693057
PGAP3_chr17_39666122_39693057	0/0	c0003	963	2	0	1	0	0	1	copy fasta	PGAP3	chr17	39666122	39693057
PGAP3_chr17_39666122_39693057	0/0	c0004	963	2	0	0	2	0	0	copy fasta	PGAP3	chr17	39666122	39693057
PGAP3_chr17_39666122_39693057	0/0	c0005	1010	1	0	0	1	0	0	copy fasta	PGAP3	chr17	39666122	39693057
PGAP3_chr17_39666122_39693057	0/0	c0006	963	1	1	0	0	0	0	copy fasta	PGAP3	chr17	39666122	39693057
PGAP3_chr17_39666122_39693057	0/0	c0007	963	1	1	0	0	0	0	copy fasta	PGAP3	chr17	39666122	39693057
PGAP3_chr17_39666122_39693057	0/0	c0008	963	1	0	1	0	0	0	copy fasta	PGAP3	chr17	39666122	39693057
PGAP3_chr17_39666122_39693057	0/0	c0009	963	1	0	1	0	0	0	copy fasta	PGAP3	chr17	39666122	39693057
PGAP3_chr17_39666122_39693057	0/0	c0010	963	1	0	0	1	0	0	copy fasta	PGAP3	chr17	39666122	39693057